Presentation
file |
introducer |
date |
Christopher
Lee, Catherine Grasso and Mark F. "Sharlow,Multiple
Sequence Alignment Using Partial Order Graphs",BIOINFORMATICS, Vol.
18 no. 3 2002, Pages 452~464
|
黃奕堯 |
Feb. 21
|
Joao
Meidanis and Zanoni Dias,
"Genome Rearrangements Distance by Fusion, Fission, and Transposition
is Easy",Proceedings of
SPIRE'2001 - String Processing and Information Retrieval. November, 13-15,
2001
|
孫嘉璘 |
Feb. 21
|
Mohammed J.
Zaki, Shan Jin and Chris Bystroff, "Mining Residue Contacts in Proteins Using Local Structure Predictions", IEEE International Symposium on Bio-Informatics and Biomedical Engineering, November 08 - 10, 2000, pp.168
|
鄭瑞興 |
Feb. 21
|
David
Sankoff, Gopalakrishnan Sundaram, John Kececioglu,
"Steiner Points in the Space of Genome Rearrangements",International Journal
of Foundations of Computer Science, Vol. 7, No. 1, Pp.1- 9, Mar. 1996
|
黃宏偉 |
Feb. 21
|
Finding
Motifs in Amino Acid Sequences
|
廖英哲 |
Mar. 14
|
Sing-Hoi
Sze, "Algorithms
and Software for Support of Gene Identification Experiments",Bioinformatics, Vol.
41, No. 1, pp. 14-19, Feb. 1998
|
劉威廷 |
Mar. 14
|
Mathieu
Blanchette, Takashi Kunisawa, David Sankoff,
"Parametric Genome Rearrangement",Gene 172, GC 11-17,
1996
|
黃宏偉 |
Mar. 14
|
N.
R. Steffen, S. D. Murphy, L. Tolleri, G. W. Hatfield and R. H. Lathrop,
"DNA Sequence and Structure: Direct and Indirect Recognition in
Protein-DNA Binding", BIOINFORMATICS, Vol.
18 Suppl. 1 2002, Pages S22~S30
|
黃奕堯 |
Mar. 19
|
RNA Structure
Alignment
|
吳孟宜 |
Mar. 19
|
Elena
Rivas and Sean R. Eddy,
"The Language of RNA: a formal grammar that includes pseudoknots",Bioinformatics, vol.
16, no. 4 2000, pp.334-340
|
孫嘉璘 |
Mar. 19
|
Piort
Wasiewics, Artur Malinowaski, Robert Nowak, Jan J. Mulawka, Piotr Borsuk, Piotr Weglenski,
Andrzej Plucienniczak, "DNA Computing Implementation of Data
Flow Logical Operations", Future
Generation Computer Systems, Vol. 17, 2001, pp. 361-378
|
陳建儐 |
Mar. 26
|
Christina
M Kraemer-Pecore, Andrew M Wollacott and John R Desjarlais,
"Computational Protein Design",Curr. Opin. Chem. Biol.
Vol. 5, Issue 6, Dec. 2001, pp. 690-695
|
孫嘉璘 |
April 2
|
David
Sankoff,
"Genome Rearrangement with Gene Families", Bioinformatics, Vol.
15, No. 11, pp. 909-917, 1999
|
黃宏偉 |
April 2
|
Mounir
Errami, Christophe Geourjon and Gilbert Deleage,
"Detection of Unrelated Proteins in Sequences Multiple Alignments
by Using Predicted Secondary Structures", BIOINFORMATICS, Vol.
19 no. 4 2003, Pages 506-512
|
黃奕堯 |
April 16
|
Burkhard
Mogenstern, Kornelie Frech, Adreas Dress and Thmas Werner,
"DIALIGN: Finding Local Similarities by Multiple Sequence Alignment",
BIOINFORMATICS,
Vol. 14, 1998, pp. 290-294
|
陳建儐 |
April 16
|
Kevin
Charter, Jonathan Schaeffer, Duane Szafron,
"Sequence
Alignment Using FastLSA ",
International
Conference on Mathematics and Engineering Techniques in Medicine and Biological
Sciences (METMBS'2000), pp. 239-245, 2000
|
彭永興
|
April 16
|
Chaim
Linhart and Ron Shamir,"The
Degenerate Primer Design Problem", Bioinformatics, Vol.
18, No.3, pp.172-180, April. 2002
|
劉威廷 |
April 25
|
Burkhard
Rost and Chris Sander,"Prediction
of Protein Secondary Structure at Better than 70% Accuracy", Journal of Molecular
Biology (1993) 232, 584-599
|
曾球庭 |
April 25
|
James
A. Cuff, Geoffrey J. Barton,
"Application of Multiple Sequence Alignment Profiles to Improve Protein
Secondary Structure Prediction", Proteins: Structure,
Function, and Genetics, Issue 40, pp.502-511, 2000
|
黃宏偉 |
April 30
|
W.A.
Burkhard and R.M. Keller,
"Some Approaches to Best-Match File Searching",Communications
of
the ACM Vol. 16 No. 4 p230-236, April 1973
|
王嘉章 |
April 30
|
Ming-Hua
Hsieh, Wei-Che Hsu, Sung-Kay Chiu and Chi-Meng Tzeng, "An Efficient
Algorithm For Minimal Primer Set Selection", Bioinformatics, Vol.
19, No.2, pp.285-286, Jan. 2003
|
劉威廷 |
May 16
|
Mathieu
Blanchette and Saurabh Sinha,
"Separating Real Motifs from Their Artifacts
", BIOINFORMATICS,
Vol. 17, 2001, pp. s30-s38
|
陳建儐 |
May 16
|
Naomi
Siew, Arne Elofsson, Leszek Rychlewski and Daniel Fischer,
"MaxSub: an Automated Measure for the Assessment of Protein Structure
Prediction Quality ",
BIOINFORMATICS
Vol. 16 no. 9 2000 Pages 776-785
|
彭永興
|
May 16
|
David
Sankoff, Mathieu Blanchette,
"Multiple Genome Rearrangement", Annual Conference on Research
in Computational Molecular Biology
,pp. 243-247, 1998
|
黃宏偉 |
May 23
|
Jan
Gorodkin, L. Stricklin and Gary D. Stormo,
"Discovering Common Stem-loop Motifs in Unaligned RNA Sequences",
Nucleic Acids Research,
2001, Vol. 29, No. 10, pp.2135-2144
|
曾球庭 |
May 23
|
An-Suei
Yang, "Structure-dependent
Sequence Alignment for Remotely Related Proteins", BIOINFORMATICS, Vol.
18, No. 12, Pages 1658-1665, 2002
|
黃奕堯 |
May 30
|
Saurabh
Sinha and Martin Tompa, "A Statistical Method for Finding Transcription
Factor Binding Sites", Department of Computer Science and Engineering,
University of Washington
|
陳建儐 |
May
30 |
Kui
Zhang, Minghua Deng, Ting Chen. Michaael S. Waterman et al., "A Dynamic
Programming Algorithm for Haplotype Block Partitioning", PNAS(Proceedings
of the National Academy of Sciences of the United States of America),
Vol. 99, No. 11, 2002, pp. 7335-7339
|
孫嘉璘 |
May
30 |
S.
Uliel,A. dliess,A. Amir and R. Unger, "A Simple Algorithm for Detecting Circular Permutations in Proteins", BIOINFORMATICS Vol. 15 no. 11 p930-936, 1999
|
王嘉章 |
May
30 |
Kimmo Palin , Esko
Ukkonen, Alvis Brazma and Jaak Vilo, "Correlating Gene Promoters and Expression in Gene Disruption Experiments",
Bioinformatics, Vol. 18, No.2, pp.s172-s180, Oct. 2002
|
劉威廷 |
June 27
|
Cédric Notredame,
Emmet A. O’Brien and Desmond G. Higgins, "RAGA: RNA sequence
alignment by genetic algorithm", Nucleic Acids Research,
1997, Vol. 25, No. 22
|
曾球庭 |
June 27
|
Bruce A.
Shapiro, Jin Chu Wu, David Bengali and Mark J. Potts, "The Massively
Parallel Genetic Algorithm for RNA Folding: MIMD Implementation
and Population Variation", BIOINFORMATICS, Vol. 17, no. 2, pp. 137-148,
2001
|
王嘉章 |
July 3 |
Patrice
Koehl and Michael Levitt ,"Sequence
Variations within Protein Families are Linearly Related to Structural
Variations", J. Mol. Biol., No. 323,
pp. 551-562, 2002
|
黃奕堯 |
July 22
|
Gary B. Fogel, V William
Proto, Dana G. Weekes, David B. Fogel, Richard H. Griffey, John A. McNeil,
Elena Lesnik, David J. Ecker, and Rangarajan Sampath ,
"Discovery of RNA Structural Elements Using Evolutionary Computation",
Nucleic Acids Research,
2002, Vol. 30, No. 23
|
曾球庭 |
July 22
|
Yuh-Jyh
Hu, Dennis Kibler, and Suzanne Sandmeyer, "Detecting Motifs from
Sequences", Proceedings of the 16th International Conference
on Meachine Learning 1999,pp. 181-190
|
劉威廷 |
July 31
|
Gary
D. Storme,"DNA
Binding Sites: Representation and Discovery", BIOINFORMATICS,
Vol. 16, no. 1, 2000, pp. 16-23
|
陳建儐 |
July 31
|
John
D. Kececioglu, and R.Ravi, "Of Mice and Men: Algorithms for Evolutionary
Distances between Genomes with Translocation",Proceedings of the
6th ACM-SIAM Symposium on Discrete Algorithms, 604-613, 1995
|
黃宏偉 |
July 31
|
Oliviero
Carugo and Sandor Pongor, "Protein Fold Similarity Estimated by a
Probabilistic Approach Based on Cα-Cα Distance Comparison",J.
Mol. Biol., No. 315, pp. 887-898, 2002
|
黃奕堯 |
Aug. 19 |
Dirk
Faulhammer, Anthony R.Cukras, Richard J. Lipton and Laura F. Landweber,
"Molecular Computation: RNA Soultions to Chess Problem", Proceedings of the National
Academy of Sciences (PNAS), Vol. 97, No. 4, pp. 1385-1389, 2000
|
孫嘉璘 |
Aug. 19 |
Richard
J. Lipton ,"DNA Solution of Hard Computational Problems", Science,
Vol. 268, Issue 5210 (Apr. 28, 1995), pp. 542-545
|
王嘉章 |
Aug. 19 |
Transforming
Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations
by Reversals(聯合meeting) |
曾球庭 |
Sept. 12
|
Longest
Common Subsequence Problem and Its Approximation Algorithms(聯合meeting)
|
黃國璽 |
Sept. 12 |
The
Mammalian Protein–Protein Interaction
Database and Its Viewing System That Is Linked to the Main FANTOM2 Viewer(聯合meeting)
|
蔡欣吟(生醫所) |
Sept. 12
|
Catherine H. Schein and Werner Braun* ,"Data Mining of Sequences and
3D Structures of Allergenic Proteins ", Ovidiu Ivanciuc ,
Bioinformatics, Vol. 18, No. 10, pp 1358-1364, 2002
|
王嘉章 |
Sept. 17
|
Greg
Gloor, Lila Kari, Michelle Gaasenbeek, and Sheng Yu, " Toward a DNA
Solution to the Shortest Common Superstring Problem ",
International Journal on Artificial Intelligence Tools,
Vol. 8, No. 4 , pp. 385-399, 1999 |
黃宏偉 |
Sept. 17
|
Lei
Li, Jong Hyun Kim and Michael S. Waterman, " Haplotype Reconstruction
From SNP Alignment ",
Proceedings of the Seventh International Conference on
Research in Computational Molecular Biology, 2003, pp.207-216 |
孫嘉璘 |
Sept. 17
|
Kuo-Chen
Chou, "Prediction of Protein Subcellular Locations by Incorporating Quasi-Sequence-Order
Effect", Biochemical and Biophysical Research Communications 278, 477-483 (2000) |
彭永興
|
Sept. 25
|
Motif
Finding in Transcription Factor Binding Sites(聯合meeting) |
陳建儐 |
Oct. 02 |
On
the Complexity Measures of Genetic Sequences(聯合meeting) |
王嘉章 |
Oct. 02 |
Prediction of Protein Subcellular
Locations by Incorporating Quasi-Sequence-Order Effect(聯合meeting)
|
李崑豪(生醫所) |
Oct. 02 |
JACEK BLAZEWICZ AND
MARTA KASPRZAK, "Hybrid Genetic Algorithm for DNA
Sequencing with Errors", Journal of Heuristics, Vol.
8, pp. 495-502,2002
|
劉威廷 |
Oct. 17
|
Qi
Ouyang, Peter D. Kaplan, Shumao Liu, Albert Libchaber,"DNA
Solution of the Maximal Clique Problem" , Science,
Vol. 278, Issue 17, pp. 446-449, Oct. 1997
|
黃宏偉 |
Oct. 17
|
Kuo-Chen Chou,
"Prediction of Protein Subcellular Locations by Incorporating Quasi-Sequence-Order Effect",
Biochemical and Biophysical Research Communications 278, 477-483 (2000)
|
彭永興
|
Oct. 17
|
Minghua
Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun, "Prediction
of Protein Function Using Protein-Protein Interaction Data
", Proceedings of the First IEEE Computer
Society Bioinformatics Conference: 197-206, 2002
|
黃奕堯 |
Oct. 24 |
Vineet Bafna, Eugene L. Lawler and Pavel A. Pevzner, "Approximation
Algorithms for Multiple Sequence Alignment",
Theoretical Computer Science 1997, Vol. 182, pp. 233-244
|
孫嘉璘 |
Oct. 24 |
Sergio
Diaz, Juan Luis Estaban and Mitsunori Ogihara,
"A DNA-Based Random Walk Method for Solving
k-SAT"
|
魏良泰 |
Oct. 24 |
Emily Rocke
and Martin Tompa,
"An Algorithm for Finding Novel Gapped Motif in
DNA Sequences ",
RECOMB98: Proceedings of the Second Annual
International
Conference on Computational Molecular Biology, New York, March 1998, 228-233
|
陳建儐 |
Oct. 31 |
Guo-Hui
Lin, Bin Ma Kaizhong Zhang, "Edit Distance Between Two RNA
Structures", Research in Computational Molecular Biology, 211-220 (2001)
|
彭永興
|
Oct. 31 |
Introduction
to DNA Computing(聯合meeting) |
黃宏偉
|
Nov. 07 |
Selection
of Optimal DNA Oligos for Gene Expression Arrays(聯合meeting) |
劉威廷
|
Nov. 07 |
Construction
of Phylogenetic Trees of SARS Virus(聯合meeting) |
黃國璽 |
Nov. 07 |
Lon
R. Cardon and Goncalo R. Abecasis, Using Haplotype Blocks to Map Human
Complex Trait Loci, Trends in Genetics Vol. 19 No. 3 March 2003 |
孫嘉璘
|
Nov. 14 |
Elon
Portugaly, Ilona Kifer and Michal Linial,
Selecting Targets for Structural Determination by Navigating in a Graph
of Protein Families, BIOINFORMATICS, Vol. 18, No. 7, Pages 899-907, 2002 |
|
Nov. 14 |
Pavel
A. Pevzner and Sing-Hoi Sze,
Combinatorial Approaches to Finding Sublet Signals in
DNA Sequences
, In Proceedings of the
Eighth International Conference on Intelligent Systems for Molecular
Biology (ISMB 2000) |
陳建儐 |
Nov. 28 |
Hasan
H. Otu and Khalid Sayood,
A Divide-and-conquer Approach to Fragment Assembly,
BIOINFORMATICS, Vol. 19, No. 1, pp. 22-29, 2003 |
王嘉章 |
Nov. 28 |
T. L. Bailey and C. Elkan,
Unsupervised Learning of Multiple Motifs inBiopolymers Using Expectation Maximization,
Machine Learning, Vol. 21, No. 1-2, pp. 51-80, 1995. |
劉威廷 |
Nov. 28 |
|
|
Dec. 05 |
|
黃奕堯 |
Dec. 05 |
SNP Haplotype Block Partition and tagSNP Finding(聯合meeting)
|
孫嘉璘 |
Dec. 05 |
Prediction of Protein-Protein Interations by Docking Methods |
孫嘉璘 |
Dec. 26 |
The Neuronal Calcium Sensor Family of Ca2+ -binding Proteins,
Biochemical Journal, Vol.353, 2001, pp. 1-12 |
陳建儐 |
Dec. 26 |
See-Kiong Ng, Zhuo Zhang,
Soon-Heng Tan, "Integrative Approach for Computationally Inferring Protein Domain Interactions",
Bioinformatics 19(8), 923-929, 2003 |
彭永興
|
Dec. 26 |
Abdullah N. Arslan and Omer
Egciohglu, "Approximation Algorithms for Local Alignment with Length Constraint".
International Journal of Foundations of Computer Science, Vol. 13, No. 5, pp.751-767, 2002 |
魏良泰
|
Dec. 26 |
Alfonso Valencia and Florencio Pazos, Computational methods for the prediction of protein interactions,
Current Opinion in Structural Biology, Volume 12, Issue 3, pp. 368-373, 2002 |
劉威廷 |
Dec. 30 |
Jong Park, Michael Lappe and Sarah A. Teichmann,
"Mapping Protein Family Interactions: Intramolecular and Intermolecular Protein Family Interaction Repertoires in the PDB and Yeast",
J. Mol. Biol. 307, pp. 929-938, 2001 |
曾球庭 |
Dec. 30 |