Bioinformatics and Computation

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2021年

Presentation file introducer date paper video
Marco Tulio Ribeiro, Tongshuang Wu, Carlos Guestrin, Sameer Singh "Beyond Accuracy: Behavioral Testing of NLP Models with CheckList " July 2020 Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics 陳佳琳 Jan. 05
Gad M. Landau, Baruch Schieber, Michal Ziv-Ukelson "Sparse LCS Common Substring Alignment " Information Processing Letters 88 (2003) 259–270 李紹瑄 Jan. 05
Kohei Yamada ,Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai Masayuki Takeda "Faster STR-EC-LCS Computation " Japan Science and Technology Agency, Kawaguchi(川口市), Japan 宋恩安 Jan. 05
Majid Sazvar, Mahmoud Naghibzadeh, Nayyereh Saadati"Quick-MLCS: a new algorithm for the multiple longest common subsequence problem" Proceedings of the Fifth International C* Conference on Computer Science and Software Engineering, June 2012, Pages 61–66 廖育儒 Jan. 12
Sayyed Rasoul Mousavi and Farzaneh Tabataba"An improved algorithm for the longest common subsequence problem"Computers & Operations Research, Volume 39, Issue 3, March 2012, Pages 512-520. 林鑫成 Jan. 12
Reed A. Cartwright"Ngila: Global Pair-wise Alignments with Logarithmic and Affine Gap Costs"Bioinformatics. 2007 Jun 1; 23(11): 1427–1428. 蔡元修 Jan. 12
Domenico Ficara, Stefano Giordano" An Improved DFA for Fast Regular Expression Matching"ACM SIGCOMM Computer Communication Review 詹敬平 Jan. 19
J. David Schaffer and Amy Morishima"An Adaptive Crossover Distribution Mechanism For Genetic Algorithms"Genetic Algorithms and their Applications: Proceedings of the Second International Conference on Genetic Algorithms, 1987, pp. 36-40. 李子旭 Jan. 19
Hamid Arabnejad, Jorge G. Barbosa, Member"Scheduling Algorithm for Heterogeneous Systems by an Optimistic Cost Table"IEEE Transactions on Parallel and Distributed Systems, vol. 25, no. 3, pp. 682-694, March 2014, 吳智愷 Jan. 19
Chirag Jain, Haowen Zhang, Yu Gao, and Srinivas Aluru"On the Complexity of Sequence-to-graph Alignment"Journal of Computational Biology Volume 27, Number 0, 2020, Pages 1-15 張育誠 Jan. 26
Christian Blum, Maria J. Blesa and Manuel López-Ibáñez"Beam search for the longest common subsequence problem"Computers & Operations Research, Volume 36, Issue 12, December 2009, Pages 3178-3186 林鑫成 Jan. 26
Toan-Thang Ta, Yi-Kung Shieh, Chin-Lung Lu "Computing a longest common almost-increasing subsequence (LCaIS)of two sequences " Theoretical Computer Science Volume 854, 16 January 2021, Pages 44-51 吳爵君 Jan. 26
Maxime Crochemore, Gad M. Landau, and Michal Ziv-Ukelson "A Subquadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrices "SIAM Journal on Computing, Vol. 32, No. 6, pp. 1654–1673, 2003 李紹瑄 Feb. 02
Keita Kuboi, Yuta Fujishige, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda "Faster STR-IC-LCS computation via RLE "arXiv : 1703.04954 (15 March 2017 ) 宋恩安 Feb. 02
Huang‑Ting Chan, Hsuan‑Tsung Chiu, Chang‑Biau Yang, Yung‑Hsing Peng "The Generalized Definitions of the Two‑Dimensional Largest Common Substructure Problems ", Algorithmica, Vol. 82, pp. 2039-2062, 2020 廖育儒 Feb. 23
Sayyed Rasoul Mousavi, Farzaneh Tabataba "An Improved Algorithm for The Longest Common Subsequence Problem", Computers & Operations Research, 2012 Volume 39, Issue 3, pp512-520 呂宗霖 Feb. 23
Guillaume MarcËais, Arthur L. Delcher, Adam M. Phillippy, Rachel Coston, Steven L. Salzberg, Aleksey Zimin, "MUMmer4: A fast and versatile genome alignment system", PLoS Computational Biology, 26 January 2018(open access) 蔡元修 Feb. 23
Chun-Yen Ho and Hsuan-Tien Lin "Contract Bridge Bidding by Learning ",2015 AAAI Workshop, Hyatt Regency in Austin, Texas, USA 詹敬平 Mar. 02
Shou-Fu Lo, Kuo-Tsung Tseng, Chang-Biau Yang and Kuo-Si Huang "A diagonal-based algorithm for the longest common increasing subsequence problem",Theoretical Computer Science, Volume 815, May 2020, Pages 69-78. 林鑫成 Mar. 02
D. T. Lee and Majid Sarrafzadeh "Maximum Independent Set of A Permutation Graph in k Tracks",International Journal of Computational Geometry & Applications Vol. 3. No. 3 (1993) Page 291-304 張育誠 Mar. 02
Artan Mazrekaj, Arlinda Sheholli, Dorian Minarolli, Bernd Freisleben Faculty of Contemporay Sciences and Technologies, SEEU University, Tetovo, Republic of North Macedonia "The Experiential Heterogeneous Earliest Finish Time Algorithm for Task Scheduling in Clouds",9th International Conference on Cloud Computing and Services Science (CLOSER 2019), pages 371-379 吳爵君 Mar. 09
Kejue Jia, Robert L. Jernigan and Roy J. Carver "New Amino Acid Substitution Matrix brings Sequence Alignments into Agreement with Structure Matches",Proteins: Structure, Function, and Bioinformatics, 2021 李子旭 Mar. 09
Chu-Min Li, Hua Jianga, Felip Manyà "On minimization of the Number of Branches in Branch-and-Bound Algorithms for the Maximum Clique Problem",Computers & Operations Research, 2017 Volume 84, pp.1-15 呂宗霖 Mar. 09
Mohammad I. Daoud and Nawwaf Kharma,"A high performance algorithm for static task scheduling in heterogeneous distributed computing systems",Journal of Parallel and Distributed Computing, Volume 68, Issue 4, April 2008, Pages 399-409 吳智愷 Mar. 17
Amr Elmasry,"The longest almost-increasing subsequence"Information Processing Letters Volume 110, Issue 16, 31 July 2010, Pages 655-658 林鑫成 Mar. 17
Armel Nkonjoh Ngomade, Jean Frédéric Myoupo, Vianney Kengne Tchendji,"A dominant point-based parallel algorithm that finds all longest common subsequences for a constrained-MLCS problem",Journal of Computational Science 40 (2020) 101070 廖郁儒 Mar. 17
Longxin Zhang , Liqian Zhou, Ahmad Salah,"Efficient scientific workflow scheduling for deadline-constrained parallel tasks in cloud computing environments",Information Sciences 531(2020) 31-46 吳爵君 Mar. 24
Lori L. Delooze , James Downey,"Bridge Bidding with Imperfect Information",2007 IEEE Symposium on Computational Intelligence and Games, Honolulu, HI, USA P368~P373 詹敬平 Mar. 24
Xingzhe Xie, Wenzhi Liao, Hamid Aghajan, Peter Veelaert and Wilfried Philips,"Detecting Road Intersections from GPS Traces Using Longest Common Subsequence Algorithm",International Journal of Geo-Information Vol.6 No.1 2017 宋恩安 Mar. 24
Lori L. Delooze , James Downey,"Bridge Bidding with Imperfect Information",2007 IEEE Symposium on Computational Intelligence and Games, Honolulu, HI, USA P368~P373 詹敬平 Mar. 30
Sang Won Bae and Inbok Lee,"On finding a longest common palindromic subsequence",Theoretical Computer Science, Volume 710, February 2018, Pages 29-34 李紹軒 Mar. 30
Christian Blum, Marko Djukanovic, Alberto Santini, Hua Jiang,Chu-Min Li, Felip Manyà, Günter R. Raidl,"Solving Longest Common Subsequence Problems via a Transformation to the Maximum Clique Problem",Computers & Operations Research, 2021Volume 125, 105089 呂宗霖 Mar. 30
Lori L. Delooze , James Downey,"Bridge Bidding with Imperfect Information",2007 IEEE Symposium on Computational Intelligence and Games, Honolulu, HI, USA P368~P373 詹敬平 Apr. 06
Sergei Bespamyatnikh and Michael Segal,"Enumerating longest increasing subsequences and patience sorting",Information Processing LettersVolume 76, Issues 1–2, 20 November 2000, Pages 7-11 林鑫成 Apr. 06
Yong-Joon Song , Dong Jin Ji , Hyein Seo , Gyu Bum Han,and Dong-Ho Cho,"Pairwise Heuristic Sequence Alignment Algorithm Based on Deep Reinforcement Learning",IEEE Open Journal of Engineering in Medicine and Biology, 29 Jan. 2021, vol. 2, 36-43 Louis J. Cochrane and Derek Gatherer,"Dynamic Programming Algorithms Applied to Musical Counterpoint in Process Composition An Example Using Henri Pousseur’s Scambi",Preprints, 30 June 2020 doi: 10.20944/preprints202006.0359.v1 蔡元修 Apr. 06
Ruizhi Li, Yupan Wang, Shuli Hu, Jianhua Jiang, Dantong Ouyang, Minghao Yin,"Solving the Set Packing Problem via a Maximum Weighted Independent Set Heuristic",Mathematical Problems in Engineering, Hindawi, Vol. 2020, 11 pages, December 2020. 張育誠 Apr. 13
Daxin Zhu, Lei Wang, Jun Tian and Xiaodong Wang,"A Simple Polynomial Time Algorithm for the Generalized LCS Problem with Multiple Substring Exclusive Constraints",IAENG International Journal of Computer Science,IJCS_42_3_06, 10 July 2015 廖郁儒 Apr. 13
Guan Wang, He Guo, Yuxin Wang ,"A Novel Heterogeneous Scheduling Algorithm with Improved Task Priority ",2015 IEEE 17th International Conference on High Performance Computing and Communications, 2015 IEEE 7th International Symposium on Cyberspace Safety and Security, and 2015 IEEE 12th International Conference on Embedded Software and Systems 吳爵君 Apr. 13
Chih-Kuan Yeh, Cheng-Yu Hsieh , and Hsuan-Tien Lin," Automatic Bridge Bidding Using Deep Reinforcement Learning",IEEE TRANSACTIONS ON GAMES, VOL. 10, NO. 4, DECEMBER 2018 P365~P377 詹敬平 Apr. 20
Qing Zhan, Nan Wang, Shuilin Jin,Renjie Tan, Qinghua Jiang, Yadong Wang,"ProbPFP: A Multiple Sequence Alignment Algorithm Combining Hidden Markov Model Optimized by Particle Swarm Optimization with Partition Function",BMC Bioinformatics, 2019 Volume 20, Supplement 18, Article number: 573 呂宗霖 Apr. 20
Bernardo Morales-Castañeda, Daniel Zaldīvar, Erik Cuevas, Fernando Fausto and Alma Rodrīguez.," A Better Balance in Metaheuristic Algorithms: Does It Exist?",Swarm and Evolutionary Computation, 2020, Vol. 54, 100671. 李子旭 Apr. 20
Chih-Kuan Yeh, Cheng-Yu Hsieh , and Hsuan-Tien Lin," Automatic Bridge Bidding Using Deep Reinforcement Learning",IEEE TRANSACTIONS ON GAMES, VOL. 10, NO. 4, DECEMBER 2018 P365~P377 詹敬平 Apr. 27
Seema Rani and Dr. Dharmveer Singh Rajpoot," Improvised Divide and Conquer Approach for the LIS Problem",Journal of Discrete AlgorithmsVolume 48, January 2018, Pages 17-26 林鑫成 Apr. 27
Sarad Venugopalan and Oliver Sinnen," ILP Formulations for Optimal Task Scheduling with Communication Delays on Parallel Systems",IEEE Transactions on Parallel and Distributed Systems, vol. 26, no. 1, Jan. 2015, pp. 142-151 吳智愷 Apr. 27
Krzysztof Mossakowski and Jacek Ma´ndziuk, " Neural Networks and the Estimation of Hands’ Strength in Contract Bridge",Intelligence and Soft Computing - ICAISC 2006, 8th International Conference, Zakopane, Poland, June 25-29, 2006 詹敬平 July 6
Mehran Hojati, Ashok S. Patil, " An integer linear programming-based heuristic for scheduling heterogeneous,part-time service employees", European Journal of Operational Research 209 (2011) 37–50 吳爵君 July 6
Farhana Naznin, Ruhul Sarker, Daryl Essam, " Progressive Alignment Method Using Genetic Algorithm for Multiple Sequence Alignment", IEEE Transactions on Evolutionary Computation, 2012 Volume 16, Issue 5, pp. 615-631 呂宗霖 July 6
Yi-Kung Shieh, Shyong Jian Shyu, Chin Lung Lu, Richard Chia-Tung Lee, "The exact multiple pattern matching problem solved by a reference tree approach",Theoretical Computer Science Available online 17 June 2021 林鑫成 July 13
Bin Wang, Xiaochun Yang, and Jinxu Li, "Locating Longest Common Subsequences with Limited Penalty",Database Systems for Advanced Applications, pp187-201, 2017 廖郁儒 July 13
Amir Hossein Nobil, Seyed Mohammad Ebrahim Sharifnia , Leopoldo EduardoCárdenas-Barrón, "Mixed integer linear programming problem for personnel multi-day shift scheduling: A case study in an Iran hospital",Alexandria Engineering Journal, Available online 1 July 2021 吳爵君 July 13
Kunihiko Sadakane, "Compressed Suffix Trees with Full Functionality",Theory of Computing Systems, Volume 41, issue 4, December 2007, Pages 589-607 林鑫成 July 20
Jacek Ma’ndziuk and Jakub Suchan, "Neural Networks and the Estimation of Hands’ Strength in Contract Bridge",25th International Conference, ICONIP 2018, Siem Reap, Cambodia, December 13-16, 2018 詹敬平 July 20
Jun Sun, Vasile Palade, Xiaojun Wu, and Wei Fang, "Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization",IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014 vol. 11, no. 1, pp. 243-257 呂宗霖 July 20
Ross Girshick, "Fast R-CNN",Proceedings of the IEEE International Conference on Computer Vision (ICCV), 2015, pp. 1440-1448 廖郁儒 July 27
Manmohan Patidar, Ramakant Bhardwaja , Sanjay Choudharyb, "The Study of Linear Programming Approach for Optimal Scheduling of Work in A Corporation With different Models",Materialstoday: proceedings, volume 29, Part2, 2020, Pages 661-667 吳爵君 July 27
Peter Elias, "Efficient Storage and Retrieval by Content and Address of Static Files",Journal of the ACM, Volume 21, Issue 2, April 1974, Pages 246–260 林鑫成 Aug. 3
Zne-Jung Lee, Shun-Feng Su, Chen-Chia Chuang, Kuan-Hung Liu, "Genetic Algorithm with Ant Colony Optimization (GA-ACO) for Multiple Sequence Alignment",Applied Soft Computing, 2008 Volume 8, Issue 1, pp. 55-78 呂宗霖 Aug. 3
Krzysztof Mossakowski and Jacek Man´dziuk, "Learning Without Human Expertise: A Case Study of the Double Dummy Bridge Problem",IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 20, NO. 2, FEBRUARY 2009 詹敬平 Aug. 3
Tomasz Kociumaka, Shay Mozes, "Dynamic String Alignment",31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020), Copenhagen 廖郁儒 Aug. 10
Zanoni Dias, Ulisses Dias, "Sorting by Prefix Reversals and Prefix Transpositions",Discrete Applied Mathematics, 2015 Volume 181, pp. 78-89 呂宗霖 Aug. 10
Şule BİRİM, "Vehicle routing problem with cross docking: A simulated annealing approach",12th International Strategic Management Conference, ISMC 2016, 28-30 October 2016, Antalya, Turkey Procedia - Social and Behavioral Sciences 235 ( 2016 ) 149 –158 吳爵君 Aug. 10
Jacek Mańdziuk and Jakub Suchan, "Who should bid higher, NS or WE, in a given Bridge deal?",International Joint Conference on Neural Networks. Budapest, Hungary. 14-19 July 2019 詹敬平 Aug. 17
Peter M. Chen, Edward K. Lee, Garth A. Gibson, Randy H. Ketz and David A. Patterson, "RAID: High-Performance, Reliable Secondary Storage",ACM Computing Surveys, Volume 26,Issue 2, June 1994, pp. 145–185 詹敬平 Aug. 31
Anadi Agrawal and  Paweł Gawrychowski, "A Faster Subquadratic Algorithm for the Longest Common Increasing Subsequence Problem",31st International Symposium on Algorithms and Computation (ISAAC 2020), Online 林鑫成 Aug. 31
Hideo Bannai, Shunsuke Inenaga, Neerja Mhaskar, "Longest previous overlapping factor array",Information Processing Letters 168 (2021) 106097 廖郁儒 Aug. 31
Daniel S. Shen, Min Chi, "TC-DTW: Accelerating Multivariate Dynamic Time Warping Through Triangle Inequality and Point Clustering",Unpublished 林鑫成 Sept. 7
Haoran Zhang, YongtuLiang, Qi Liao, Jie Gao , Xiaohan Yan , WanZ hang, "Mixed-time mixed-integer linear programming for optimal detailed scheduling of a crude oil port depot",Chemical Engineering Research and Design Volume 137, September 2018, Pages 434-451 吳爵君 Sept. 7
M. Djukanovic, G.R. Raidl, C. Blum, "A Heuristic Approach for Solving the Longest Common Square Subsequence Problem",17th International Conference, Las Palmas de Gran Canaria, Spain Computer Aided Systems Theory – EUROCAST 2019 vol. 12013, Feb. 2019, pp. 429-437 呂宗霖 Sept. 7
         

 

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