Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023


Presentation file introducer date paper video
Peter Brass, Hyeon-Suk Na, "Finding the maximum bounded intersection of k out of n halfplanes", Information Processing Letters 110 (2010) 113�V115 ������ Jan. 5
Peilin Jia, Tieliu Shi, Yudong Cai and Yixue Li, "Demonstration of two novel methods for predicting functional siRNA efficiency",  BMC Bioinformatics Vol. 7 No. 1 1-10 �B�x�_ Jan. 5
Frederic Maffray, "Stable sets in k-colorable P5-free graphs", Information Processing Letters, Vol. 109, pp. 1235�V1237, 2009  �L�F�� Jan. 5
Qiwen Dong[���Ҥ�], Shuigeng Zhou[�P��], and Jihong Guan[��˸��], "A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation", Structural bioinformatics, Vol. 25 no. 20, 2009, pp. 2655�V2662 ���� Jan. 19 N/A
  ���T�� Jan. 19   N/A
Alain Bretto,Thierry Vallee, "A clique-covering sufficient condition for hamiltonicity of graphs", Information Processing Letters 109 (2009) 1156�V1160 ���_�� Jan. 19 N/A
Marcelo Barros de Almeida, Antônio de Pádua Braga, João Pedro Braga, "SVM-KM: speeding SVMs  learning with a  priori cluster selection and k-means", IEEE Transactions on Neural Networks 882-890, Volume: 20, Issue: 5, May 2009 �L�ӿo Jan. 26
Jiah-Shing Chen( ���[��), Chia-Lan Chang( �i���� ),Jia-Li Hou( �J�ΧQ ), Yao-Tang Lin( �Lģ�� ), "Dynamic proportion portfolio insurance using genetic programming with principal component analysis", Expert Systems with Applications, Vol. 35(2008), pp. 273-278 ���T�� Jan. 26
Hong-Wei Liu, "Predicting Non-protein-coding RNA Genes in Escherichia Coli Using SVM with Signature Descriptor", The 2nd International Symposium on Optimization and Systems Biology , pp. 287-293, Lijiang, China, 2008 �B�x�_ Jan. 26
�L�F��   Feb. 23     

Marc A. Marti-Renom, M.S. Madhusudhan,Andra�� s Fiser, Burkhard Rost, and Andrej Sali,"Reliability of Assessment of Protein Structure

Prediction Methods",Structure, Vol. 10, 435�V440, March, 2002

���T�� Feb. 23
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller and David J. Lipman,"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs",Nucleic Acids Research, 1997, Vol. 25, No. 17 3389�V3402 �L�ӿo Mar. 3
Been-Chian Chiena( ������), Jung-Yi Lina( �L����),Tzung-Pei Hongb( �x�v��),"Learning discriminant functions with fuzzy attributes for classification using genetic programming",Expert Systems with Applications, Vol. 23(2002), pp. 31-37 ���T�� Mar.3
Lei Chen , Changhong Lu, Zhenbing Zeng,"A linear-time algorithm for paired-domination problem in strongly chordal graphs",Information Processing Letters 110 (2009) 20�V23 �P���� Mar. 9

C.Z. Cai, L.Y. Han, Z.L. Ji, X. Chen and Y.Z. Chen,"SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence",3692�V3697 Nucleic Acids Research, 2003, Vol 31, No, 13

�B�x�_ Mar. 9

Janne Korhonen, Petri Martinmaki, Cinzia Pizzi, Pasi Rastas and Esko Ukkonen,"MOODS: fast search for position weight matrix matches in DNA sequences",BIOINFORMATICS Vol. 25 no. 23 2009, pages 3181�V3182

���_�� Mar. 9
J. Holub, W. F. Smyth, S. Wang,"Fast Pattern Matching on Indeterminate Strings",Journal of Discrete Algorithms, Vol. 6, pp. 37-50, 2008
���y�x Mar. 16
Jose Martinez Sotoca, Filiberto Pla,"Supervised feature selection by clustering using conditional mutual information-based distances",Pattern Recognition 43 (2010) 2068�V2081
���� Mar. 23
Ming-Yen Lin(�L����), Sue-Chen Hsueh(���g��) and Chia-Wen Chang(�i�a�Z),"Mining Closed Sequential Patterns with Time Constraints",Journal of Information Science and Engineering 24, 33-46 (2008)
������ Mar. 23
Mengjie Zhang, Will Smart,"Using Gaussian distribution to construct fitness functions in genetic programming for multiclass object classification",Pattern Recognition Letters, Vol. 27(2006), pp. 1266-1274
���T�� Mar. 30
Yi Shi, Jianjun Zhou, David Arndt, David S Wishart and Guohui Lin,"Protein contact order prediction from primary sequences",BMC Bioinformatics, vol. 9, pp. 255, 2008
���T�� Apr. 6
JI-CHERNG LIN(�L��), TETZ C. HUANG(������), CHENG-PIN WANG(�����y)AND CHIH-YUAN CHEN(���ӻ�),"A Self-Stabilizing Algorithm for Finding a Minimal Distance-2 Dominating Set in Distributed Systems",JOURNAL OF INFORMATION SCIENCE AND ENGINEERING, Vol. 24, pp. 1709-1718, 2008
�L�F�� Apr. 13
Costas S. Iliopoulos , M. Sohel Rahman,"New efficient algorithms for the LCS and constrained LCS problems",Information Processing Letters 106 (2008) 13�V18
���_�� Apr. 13
O. Keller, T. Kopelowitz, and M. Lewenstein,"On the Longest Common Parameterized Subsequence",Lecture Notes in Computer Science, Vol. 5029, pp. 303-315, 2008
���y�x Apr. 13
Wei Huang, Yoshiteru Nakamori, Shou-Yang Wang,"Forecasting stock market movement direction with support vector machine",Computers & Operations Research 32 (2005) 2513�V2522
�P���� Apr. 20
Chin-Sheng Yu, Chin-Jen Lin, and Jenn-Kang Hwang,"Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions",Protein Society 13: 1402�V1406
�B�x�_ Apr. 20
Amihood Amir, Zvi Gotthilf , B. Riva Shalom,"Weighted LCS",Journal of Discrete Algorithms 20
������ Apr. 27
Durga Prasad Muni, Nikhil R. Pal, and Jyotirmoy Das,"Genetic Programming for Simultaneous Feature Selection and Classifier Design",IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS, VOL. 36, NO. 1, FEBRUARY 2006
���� Apr. 27
Kiyoshi Izumi(�M�u��), Fujio Toriumi(�������G��), Hiroki Matusi, "Evaluation of automated-trading strategies using an artificial market",Neurocomputing, Vol. 72 (2009), pp. 3469-3476
���T�� May 4
Kai Ming Ting and Ian H. Witten, "Issues in Stacked Generalization",Journal of Artificial Intelligence Research Volume 10, pages 271-289, 1999
�L�ӿo May 4
Chen-Ming Hsu, Chien-Yu Chen(���ŷ�)and Baw-Jhiune Liu(�B�_�v),"MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences",Nucleic Acids Research, 2008, Vol. 36, No. 4 1401
May 10
Guilhem Faure, Aure��lie Bornot, Alexandre G. de Brevern,"Review Protein contacts, inter-residue interactions and side-chain modelling",Biochimie, vol. 90, pp. 626-639, 2008
���T�� May 10
Yoshifumi Sakai,"Computing the longest topological common subsequence of a symbol-wise totally ordered directed acyclic graph and a sequence",Theoretical Computer Science, Vol. 410, pp. 2759-2766, 2009
�L�F�� May 18
Yi-Ching Chen,"Algorithms for the Hybrid Constrained Longest Common Subsequence Problem",Department of Computer Science and Information Engineering,National Taiwan University, Taipei, Taiwan 106
���l�N May 25
Nikhil Bansal , Moshe Lewenstein , Bin Ma , kaizhong Zhang,"On the Longest Common Rigid Subsequence Problem",Algorithmica (2010) 56 :270-280
�P���� May 25
Svetlin A Manavski, and Giorgio Valle,"CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment",BMC Bioinformatics 2008, 9(Suppl 2):S10 doi:10.1186/1471-2105-9-S2-S10
���_�� June 1
Bing-Yu Sun[�]���t], Xiao-Ming Zhang[�i���], Jiuyong Li[���x�_], and Xue-Min Mao[��ǥ�],"Feature Fusion Using Locally Linear Embedding for Classification",IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 21, NO. 1, JANUARY 2010
���� June 7
Mensur Dlaki,"HHsvm: fast and accurate classification of profile�Vprofile matches identified by HHsearch",Bioinformatics, Vol. 25, No. 23, pages 3071�V3076, 2009
������ June 7
Chia-Wei Lu(�c�a��), Chuan Yi Tang(��Ǥ@) and R. C. T. Lee,"A Progressive Strategy for DNA Resequencing Problem",The 27th Workshop on Combinatorial Mathematics and Computation Theory.pages 45-49
���l�N June 14
Eunseog Youn, Lars Koenig, Myong K. Jeong, Seung H. Baek ,"Support vector-based feature selection using Fisher��s linear discriminant and Support Vector Machine",Expert Systems with Applications 37 (2010) pp.6148�V6156
�P���� June 14
Vera Afreixo, Carlos A. C. Bastos, Armando J. Pinho, Sara P. Garcia and Paulo J. S. G. Ferreira,"Genome analysis with inter-nucleotide distances",BIOINFORMATICS, Vol. 25, pp. 3064�V3070, 2009 �L�F�� June 28
Saikat Chakrabarti, A. Prem Anand, Nitin Bhardwaj, Ganesan Pugalenthi and R. Sowdhamini,"SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs",Nucleic Acids Research, 2005, Vol. 33, Web Server issue ������ June 28
Francesca Demichelis, Paolo Magni, Paolo Piergiorgi, Mark A Rubin and Riccardo Bellazzi,"A hierarchical Naive Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays",BMC Bioinformatics 2006, 7:514
���� July 19
Yixin Chen, Andrew Wan and Wei Liu,"A fast parallel algorithm for finding the longest common sequence of multiple biosequences",BMC Bioinformatics 2006, 7(Suppl 4):S4
���_�� July 19
Melek Acar Boyacioglu , Derya Avci ,"An Adaptive Network-Based Fuzzy Inference System (ANFIS) for the prediction of stock market return: The case of the Istanbul Stock Exchange",Expert Systems with Applications xxx (2010) xxx�Vxxx
�P���� July 19
D. Devetyarov, M. J Woodward, N. G Coldham, M. F Anjum and A. Gammer,"A New Bioinformatics Tool for Prediction with Confidence",The 2010 International Conference on Bioinformatics & Computational Biology
���y�x July 26
Chung-Yen Lin(�L����), Chia-Hao Chin(���a��), Hsin-Hung Wu(�d�s��), Shu-Hwa Chen(���ѵ�), Chin-Wen Ho(���A��), and Ming-Tat Ko(�����F),"Hubba: hub objects analyzer�Xa framework of interactome hubs identification for network biology",Nucleic Acids Research, 2008, Vol. 36, Web Server issue pages 438-443
���l�N July 26
Fabrizio Angiulli and Annabella Astorino,"Scaling Up Support Vector Machines Using Nearest Neighbor Condensation",IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 21, NO. 2, FEBRUARY 2010, pp.351-357
���� Aug. 16
Nicholas Hamilton, Kevin Burrage, Mark A. Ragan, and Thomas Huber,"Protein Contact Prediction Using Patterns of Correlation",BIOINFORMATICS, Vol. 56, pp. 679�V684, 2004
�L�F�� Aug. 16
Jiangning Song, Zheng Yuan, Hao Tan, Thomas Huber and Kevin Burrage,"Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure",Bioinformatics original paper, Vol. 23 no. 23 2007, pages 3147�V3154
������ Aug. 16
Deng-Yiv Chiu, Ping-Jie Chen,"Dynamically exploring internal mechanism of stock market by fuzzy-based support vector machines with high dimension input space and genetic algorithm",Expert Systems with Applications 36 (2009) 1240�V1248
�P���� Aug. 23

Yang Zhang,"Progress and challenges in protein structure prediction",Current Opinion in Structural Biology 2008, 18:342�V348
���_�� Aug. 23
Ho-Leung Chan(������), Tak-Wah Lam(�L�w��), Wing-Kin Sung(���ð�), Siu-Lung Tam, Swee-Seong Wong,"Compressed Indexes for Approximate String Matching",Algorithmica, Vol. 58, No. 2, pp. 263-281, 2010
���y�x Aug. 30
Yih-Chii Hwang(������) , Chen-Ching Lin(�����L), Jen-Yun Chang(���T��), Hirotada Mori,Hsueh-Fen Juan(������) and Hsuan-Cheng Huang(���Ÿ�),"Predicting essential genes based on network and sequence analysis",The Royal Society of Chemistry 2009 Molecular BioSystems, 2009, 5, 1672�V1678
���l�N Sept. 14
S.C. Chiam  (Swee Chiang Chiam), K.C. Tan (Kay Chen Tan, ���a�i) , A. Al Mamum,"Investigating technical trading strategy via an multi-objective evolutionary platform",Expert Systems with Applications, Vol. 36 (2009), pp. 10408-10423
���T�� Sept. 21
Sitao Wu(�d����) and Yang Zhang(�i��),"A comprehensive assessment of sequence-based and template-based methods for protein contact predi",BIOINFORMATICS, Vol. 24, pp. 924�V931, 2008
�L�F�� Sept. 21
LIN ZHU, JIE YANG, JIANG-NING SONG, KUO-CHEN CHOU, HONG-BIN SHEN,"Improving the Accuracy of Predicting Disulfide Connectivity by Feature Selection",J Comput Chem 31: 1478�V1485, 2010
������ Sept. 21
Chang Kook Oh, James L. Beck, and Masumi Yamada,"Bayesian Learning Using Automatic Relevance Determination Prior with an Application to Earthquake Early Warning",JOURNAL OF ENGINEERING MECHANICS, DECEMBER 2008, pp. 1113-1020
���� Sept. 27
Guy Nimrod, Maya Schushan, Andras Szilagyi, Christina Leslie and Nir Ben-Tal,"iDBPs: a web server for the identification of DNA binding proteins",BIOINFORMATICS, Vol. 26 no. 5 2010, pages 692�V693
���_�� Sept. 27
Hon Nian Chua, Kar Leong Tew, Xiao-Li Li(��晓��), See-Kiong Ng,"A Unified Scoring Scheme for Detecting Essential Proteins in Protein Interaction Networks",Proceedings of the 2008 20th IEEE International Conference on Tools with Artificial Intelligence, 2008, 5, 66-73
���l�N Oct. 5
Tiffany Hui-Kuang Yu(��z��) , Kun-Huang Huarng(���O��),"A neural network-based fuzzy time series model to improve forecasting",Expert Systems with Applications 37 (2010) 3366�V3372
�P���� Oct. 5
Patrik Bjorkholm, Pawel Daniluk, Andriy Kryshtafovych, Krzysztof Fidelis, Robin Andersson and Torgeir R. Hvidsten,"Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue�Vresidue contacts",BIOINFORMATICS, Vol. 25, pp. 1264�V1270, 2009
�L�F�� Oct. 12
L. Salmela, J. Tarhio and P. Kalsi,"Approximate Boyer-Moore String Matching for Small Alphabets",Algorithmica, Vol. 58, pp. 591�V609, 2010
���y�x Oct. 12
Hsuan-Hung Lin(�L�ŧ�) and Lin-Yu Tseng(��̰��),"DBCP: a web server for disulfide bonding connectivity pattern prediction without the prior knowledge of the bonding state of cysteines",Nucleic Acids Research, 2010, Vol. 38, Web Server issue W503�VW507
������ Oct. 18
Chih-Fong Tsai (������), Yu-Chieh Hsiao (��౼�),"Combining multiple feature selection methods for stock prediction: Union, intersection, and multi-intersection approaches",Decision Support Systems, In Press, Available on line August 17, 2010
���T�� Oct. 26
Richard Groult, Elise Prieur , Gwenael Richomme ,"Counting distinct palindromes in a word in linear time",Information Processing Letters, Vol. 110, pp. 908�V912, 2010
�G�ͭ� Oct. 26
DOMINIK GRONT, SEBASTIAN KMIECIK, ANDRZEJ KOLINSKI,"Backbone Building from Quadrilaterals: A Fast and Accurate Algorithm for Protein Backbone Reconstruction from Alpha Carbon Coordinates",J. Comput. Chem. 28 (2007), pp. 1593�V1597
���_�� Nov. 9
Marcio L Acencio and Ney Lemke,"Towards the prediction of essential genes by integration of,network topology, cellular localization and biological process information",BMC Bioinformatics, September 2009
���l�N Nov. 9
Amr Elmasry,"The longest almost-increasing subsequence",Information Processing Letters, Vol. 110, pp. 655-658, 2010
���l�t Nov. 9
Michael Tipping,"Sparse Bayesian Learning and the Relevance Vector Machine",Journal of Machine Learning Research, No. 1, 2001, pp.211-244
���� Nov. 16
Sebastian Deorowicz,"On Some Variants of the Longest Increasing Subsequence Problem",Theoretical and Applied Informatics, Vol. 21, No. 3-4, pp. 135�V148, 2009
���y�x Nov. 30
�f �éM(Yungho Leu), ���ب�(Chien-Pang Lee), and Chen-Chia Hung,"A Fuzzy Time Series-Based Neural Network Approach to Option Price Forecasting "Lecture Notes in Computer Science, 2010, Volume 5990/2010,360-369
�P���� Nov. 30
Jean-Christophe Gelly, Alexandre G. de Brevern, and Serge Hazout,"��Protein Peeling��: an approach for splitting a 3D protein structure into compact fragments",BIOINFORMATICS, Vol. 22, pp. 129�V133, 2006
�L�F�� Dec. 8
Qiwen Dong, Shuigeng Zhou, and Jihong Guan,"A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation",BIOINFORMATICS ORIGINAL PAPER Vol. 25 no. 20 2009
������ Dec. 14
Haihui Zhang,"On 3-choosablility of planar graphs with neither adjacent triangles nor 5-,6- and 9-cycles",Information Processing Letters 110(2010) 1084-1087
������ Dec. 14
Huzefa Rangwala and George Karypis,"Profile-based direct kernels for remote homology detection and fold recognition",BIOINFORMATICS, Vol. 21, No. 23, 2005, pages 4239�V4247
���� Dec. 22
Min Li, Jianxin Wang, Huan Wang, and Yi Pan,"Essential Proteins Discovery from Weighted Protein Interaction Networks",BIOINFORMATICS RESEARCH AND APPLICATIONS Lecture Notes in Computer Science , 2010, pages 89-100
���l�N Dec. 28


1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023