Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018

2003年

Presentation file introducer date

Christopher Lee, Catherine Grasso and Mark F. "Sharlow,Multiple Sequence Alignment Using Partial Order Graphs",BIOINFORMATICS, Vol. 18 no. 3 2002, Pages 452~464

黃奕堯

Feb. 21

Joao Meidanis and Zanoni Dias, "Genome Rearrangements Distance by Fusion, Fission, and Transposition is Easy",Proceedings of SPIRE'2001 - String Processing and Information Retrieval. November, 13-15, 2001

孫嘉璘

Feb. 21

Mohammed J. Zaki, Shan Jin and Chris Bystroff, "Mining Residue Contacts in Proteins Using Local Structure Predictions", IEEE International Symposium on Bio-Informatics and Biomedical Engineering, November 08 - 10, 2000, pp.168

鄭瑞興

Feb. 21

David Sankoff, Gopalakrishnan Sundaram, John Kececioglu, "Steiner Points in the Space of Genome Rearrangements",International Journal of Foundations of Computer Science, Vol. 7, No. 1, Pp.1- 9, Mar. 1996

黃宏偉

Feb. 21

Finding Motifs in Amino Acid Sequences

廖英哲

Mar. 14

Sing-Hoi Sze, "Algorithms and Software for Support of Gene Identification Experiments",Bioinformatics, Vol. 41, No. 1, pp. 14-19, Feb. 1998

劉威廷

Mar. 14

Mathieu Blanchette, Takashi Kunisawa, David Sankoff, "Parametric Genome Rearrangement",Gene 172, GC 11-17, 1996 黃宏偉

Mar. 14

N. R. Steffen, S. D. Murphy, L. Tolleri, G. W. Hatfield and R. H. Lathrop, "DNA Sequence and Structure: Direct and Indirect Recognition in Protein-DNA Binding", BIOINFORMATICS, Vol. 18 Suppl. 1 2002, Pages S22~S30

黃奕堯

Mar. 19

RNA Structure Alignment

吳孟宜

Mar. 19

Elena Rivas and Sean R. Eddy, "The Language of RNA: a formal grammar that includes pseudoknots",Bioinformatics, vol. 16, no. 4 2000, pp.334-340

孫嘉璘

Mar. 19

Piort Wasiewics, Artur Malinowaski, Robert Nowak, Jan J. Mulawka,  Piotr Borsuk, Piotr Weglenski, Andrzej Plucienniczak, "DNA Computing Implementation of Data Flow Logical Operations", Future Generation Computer Systems, Vol. 17, 2001, pp. 361-378

陳建儐

 Mar. 26

Christina M Kraemer-Pecore, Andrew M Wollacott and John R Desjarlais, "Computational Protein Design",Curr. Opin. Chem. Biol. Vol. 5, Issue 6, Dec. 2001, pp. 690-695

孫嘉璘

 April 2

David Sankoff, "Genome Rearrangement with Gene Families", Bioinformatics, Vol. 15, No. 11, pp. 909-917, 1999

黃宏偉

  April 2

Mounir Errami, Christophe Geourjon and Gilbert Deleage, "Detection of Unrelated Proteins in Sequences Multiple Alignments by Using Predicted Secondary Structures", BIOINFORMATICS, Vol. 19 no. 4 2003, Pages 506-512

黃奕堯

April 16

Burkhard Mogenstern, Kornelie Frech, Adreas Dress and Thmas Werner, "DIALIGN: Finding Local Similarities by Multiple Sequence Alignment", BIOINFORMATICS, Vol. 14, 1998, pp. 290-294

陳建儐

April 16

Kevin Charter, Jonathan Schaeffer, Duane Szafron, "Sequence Alignment Using FastLSA ", International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS'2000), pp. 239-245, 2000

彭永興

April 16

Chaim Linhart and Ron Shamir,"The Degenerate Primer Design Problem", Bioinformatics, Vol. 18, No.3, pp.172-180, April. 2002

劉威廷

April 25

Burkhard Rost and Chris Sander,"Prediction of Protein Secondary Structure at Better than 70% Accuracy", Journal of Molecular Biology (1993) 232, 584-599

曾球庭

April 25

James A. Cuff, Geoffrey J. Barton, "Application of Multiple Sequence Alignment Profiles to Improve Protein Secondary Structure Prediction", Proteins: Structure, Function, and Genetics, Issue 40, pp.502-511, 2000

黃宏偉

April 30

W.A. Burkhard and R.M. Keller, "Some Approaches to Best-Match File Searching",Communications of the ACM Vol. 16 No. 4 p230-236, April 1973

王嘉章

April 30

Ming-Hua Hsieh, Wei-Che Hsu, Sung-Kay Chiu and Chi-Meng Tzeng, "An Efficient Algorithm For Minimal Primer Set Selection", Bioinformatics, Vol. 19, No.2, pp.285-286, Jan. 2003

劉威廷

May 16

Mathieu Blanchette and Saurabh Sinha, "Separating Real Motifs from Their Artifacts ", BIOINFORMATICS, Vol. 17, 2001, pp. s30-s38

陳建儐

May 16

Naomi Siew, Arne Elofsson, Leszek Rychlewski and Daniel Fischer, "MaxSub: an Automated Measure for the Assessment of Protein Structure Prediction Quality ", BIOINFORMATICS Vol. 16 no. 9 2000 Pages 776-785

彭永興

May 16

David Sankoff, Mathieu Blanchette, "Multiple Genome Rearrangement", Annual Conference on Research in Computational Molecular Biology ,pp. 243-247, 1998

黃宏偉

 May 23

Jan Gorodkin, L. Stricklin and Gary D. Stormo, "Discovering Common Stem-loop Motifs in Unaligned RNA Sequences", Nucleic Acids Research, 2001, Vol. 29, No. 10, pp.2135-2144

曾球庭

 May 23

An-Suei Yang, "Structure-dependent Sequence Alignment for Remotely Related Proteins", BIOINFORMATICS, Vol. 18, No. 12, Pages 1658-1665, 2002

黃奕堯

 May 30

Saurabh Sinha and Martin Tompa, "A Statistical Method for Finding Transcription Factor Binding Sites", Department of Computer Science and Engineering, University of Washington

陳建儐 May 30

Kui Zhang, Minghua Deng, Ting Chen. Michaael S. Waterman et al., "A Dynamic Programming Algorithm for Haplotype Block Partitioning", PNAS(Proceedings of the National Academy of Sciences of the United States of America), Vol. 99, No. 11, 2002, pp. 7335-7339

孫嘉璘 May 30

S. Uliel,A. dliess,A. Amir and R. Unger, "A Simple Algorithm for Detecting Circular Permutations in Proteins", BIOINFORMATICS Vol. 15 no. 11 p930-936, 1999

王嘉章 May 30

Kimmo Palin , Esko Ukkonen, Alvis Brazma and Jaak Vilo, "Correlating Gene Promoters and Expression in Gene Disruption Experiments", Bioinformatics, Vol. 18, No.2, pp.s172-s180, Oct. 2002

劉威廷 June 27

Cédric Notredame, Emmet A. O’Brien and Desmond G. Higgins, "RAGA: RNA sequence alignment by genetic algorithm", Nucleic Acids Research, 1997, Vol. 25, No. 22

曾球庭 June 27

Bruce A. Shapiro, Jin Chu Wu, David Bengali and Mark J. Potts, "The Massively Parallel Genetic Algorithm for RNA Folding: MIMD Implementation and Population Variation", BIOINFORMATICS, Vol. 17, no. 2, pp. 137-148, 2001

王嘉章 July 3

 Patrice Koehl and Michael Levitt ,"Sequence Variations within Protein Families are Linearly Related to Structural Variations", J. Mol. Biol., No. 323, pp. 551-562, 2002

黃奕堯 July 22

Gary B. Fogel, V William Proto, Dana G. Weekes, David B. Fogel, Richard H. Griffey, John A. McNeil, Elena Lesnik, David J. Ecker, and Rangarajan Sampath , "Discovery of RNA Structural Elements Using Evolutionary Computation", Nucleic Acids Research, 2002, Vol. 30, No. 23

曾球庭 July 22

Yuh-Jyh Hu, Dennis Kibler, and Suzanne Sandmeyer, "Detecting Motifs from Sequences", Proceedings of the 16th International Conference on Meachine Learning 1999,pp. 181-190

劉威廷 July 31

Gary D. Storme,"DNA Binding Sites: Representation and Discovery", BIOINFORMATICS, Vol. 16, no. 1, 2000, pp. 16-23

陳建儐 July 31

John D. Kececioglu, and R.Ravi, "Of Mice and Men: Algorithms for Evolutionary Distances between Genomes with Translocation",Proceedings of the 6th ACM-SIAM Symposium on Discrete Algorithms, 604-613, 1995

黃宏偉 July 31

Oliviero Carugo and Sandor Pongor, "Protein Fold Similarity Estimated by a Probabilistic  Approach Based on Cα-Cα Distance Comparison",J. Mol. Biol., No. 315, pp. 887-898, 2002

黃奕堯 Aug. 19

Dirk Faulhammer, Anthony R.Cukras, Richard J. Lipton and Laura F. Landweber, "Molecular Computation: RNA Soultions to Chess Problem", Proceedings of the National Academy of Sciences (PNAS), Vol. 97, No. 4, pp. 1385-1389, 2000

孫嘉璘 Aug. 19

Richard J. Lipton ,"DNA Solution of Hard Computational Problems", Science, Vol. 268, Issue 5210 (Apr. 28, 1995), pp. 542-545

王嘉章 Aug. 19
Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals(聯合meeting) 曾球庭

Sept. 12

Longest Common Subsequence Problem and Its Approximation Algorithms(聯合meeting) 黃國璽 Sept. 12
The Mammalian Protein–Protein Interaction
Database and Its Viewing System That Is Linked to the Main FANTOM2 Viewer
(聯合meeting)
蔡欣吟(生醫所)

Sept. 12

Catherine H. Schein and Werner Braun* ,"Data Mining of Sequences and 3D Structures of Allergenic Proteins ", Ovidiu Ivanciuc , Bioinformatics, Vol. 18, No. 10, pp 1358-1364, 2002 王嘉章

Sept. 17

Greg Gloor, Lila Kari, Michelle Gaasenbeek, and Sheng Yu, " Toward a DNA Solution to the Shortest Common Superstring Problem ", International Journal on Artificial Intelligence Tools, Vol. 8, No. 4 , pp. 385-399, 1999 黃宏偉

Sept. 17

Lei Li, Jong Hyun Kim and Michael S. Waterman, " Haplotype Reconstruction From SNP Alignment ", Proceedings of the Seventh International Conference on Research in Computational Molecular Biology, 2003, pp.207-216 孫嘉璘

Sept. 17

Kuo-Chen Chou, "Prediction of Protein Subcellular Locations by Incorporating Quasi-Sequence-Order Effect", Biochemical and Biophysical Research Communications 278, 477-483 (2000) 彭永興 Sept. 25
Motif Finding in Transcription Factor Binding Sites(聯合meeting) 陳建儐 Oct. 02
On the Complexity Measures of Genetic Sequences(聯合meeting) 王嘉章 Oct. 02

Prediction of Protein Subcellular Locations by  Incorporating Quasi-Sequence-Order Effect(聯合meeting)

李崑豪(生醫所) Oct. 02

 JACEK BLAZEWICZ  AND  MARTA KASPRZAK, "Hybrid Genetic Algorithm for DNA   Sequencing with Errors", Journal of Heuristics, Vol. 8, pp. 495-502,2002

劉威廷

Oct. 17

Qi Ouyang, Peter D. Kaplan, Shumao Liu, Albert Libchaber,"DNA Solution of the Maximal Clique Problem" , Science, Vol. 278, Issue 17, pp. 446-449, Oct. 1997

黃宏偉

Oct. 17

Kuo-Chen Chou, "Prediction of Protein Subcellular Locations by Incorporating Quasi-Sequence-Order Effect", Biochemical and Biophysical Research Communications 278, 477-483 (2000) 彭永興 Oct. 17

Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun, "Prediction of Protein Function Using Protein-Protein Interaction Data ", Proceedings of the First IEEE Computer Society Bioinformatics Conference: 197-206, 2002

黃奕堯 Oct. 24

Vineet Bafna, Eugene L. Lawler and Pavel A. Pevzner, "Approximation Algorithms for Multiple Sequence Alignment", Theoretical Computer Science 1997, Vol. 182, pp. 233-244

孫嘉璘 Oct. 24

Sergio Diaz, Juan Luis Estaban and Mitsunori Ogihara, "A DNA-Based Random Walk Method for Solving k-SAT" 

魏良泰 Oct. 24

Emily Rocke and Martin Tompa, "An Algorithm for Finding Novel Gapped Motif in DNA Sequences ", RECOMB98: Proceedings of the Second Annual International Conference on Computational Molecular Biology, New York, March 1998, 228-233

陳建儐 Oct. 31
Guo-Hui Lin, Bin Ma Kaizhong Zhang, "Edit Distance Between Two RNA Structures", Research in Computational Molecular Biology, 211-220 (2001) 彭永興 Oct. 31
Introduction to DNA Computing(聯合meeting)

黃宏偉

Nov. 07
Selection of Optimal DNA Oligos for Gene Expression Arrays(聯合meeting)

劉威廷

Nov. 07
Construction of Phylogenetic Trees of SARS Virus(聯合meeting) 黃國璽 Nov. 07
Lon R. Cardon and Goncalo R. Abecasis, Using Haplotype Blocks to Map Human Complex Trait Loci, Trends in Genetics Vol. 19 No. 3 March 2003 孫嘉璘 Nov. 14
Elon Portugaly, Ilona Kifer and Michal Linial, Selecting Targets for Structural Determination by Navigating in a Graph of Protein Families, BIOINFORMATICS, Vol. 18, No. 7, Pages 899-907, 2002

黃奕堯

Nov. 14
Pavel A. Pevzner and Sing-Hoi Sze, Combinatorial Approaches to Finding Sublet Signals in DNA Sequences ,  In Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology (ISMB 2000)  陳建儐  Nov. 28
Hasan H. Otu and Khalid Sayood, A Divide-and-conquer Approach to Fragment Assembly, BIOINFORMATICS, Vol. 19, No. 1, pp. 22-29, 2003 王嘉章  Nov. 28
T. L. Bailey and C. Elkan, Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization, Machine Learning, Vol. 21, No. 1-2, pp. 51-80, 1995. 劉威廷 Nov. 28
Chui-Wei Wong

(生醫所)

Dec. 05
黃奕堯  Dec. 05
SNP Haplotype Block Partition and tagSNP Finding(聯合meeting) 孫嘉璘 Dec. 05
 Prediction of Protein-Protein Interations by Docking Methods 孫嘉璘 Dec. 26
 The Neuronal Calcium Sensor Family of Ca2+ -binding Proteins, Biochemical Journal, Vol.353, 2001, pp. 1-12 陳建儐  Dec. 26
See-Kiong Ng, Zhuo Zhang, Soon-Heng Tan, "Integrative Approach for Computationally Inferring Protein Domain Interactions", Bioinformatics 19(8), 923-929, 2003 彭永興 Dec. 26
Abdullah N. Arslan and Omer Egciohglu, "Approximation Algorithms for Local Alignment with Length Constraint". International Journal of Foundations of Computer Science, Vol. 13, No. 5, pp.751-767, 2002 魏良泰 Dec. 26
Alfonso Valencia and Florencio Pazos, Computational methods for the prediction of protein interactions, Current Opinion in Structural Biology, Volume 12, Issue 3, pp. 368-373, 2002  劉威廷  Dec. 30
Jong Park, Michael Lappe and Sarah A. Teichmann, "Mapping Protein Family Interactions: Intramolecular and Intermolecular Protein Family Interaction Repertoires in the PDB and Yeast", J. Mol. Biol. 307, pp. 929-938, 2001 曾球庭 Dec. 30

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018