Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018

2009年

Presentation file introducer date paper video
Chi-Hung Tsai, Bo-Juen Chen, Chen-hsiung Chan, Hsuan-Liang Liu and Cheng-Yan Kao, "Improving disulfide connectivity prediction with sequential distance between oxidized cysteines", Bioinformatics, Vol. 21 no. 24 2005, pages 4416–4419 鐘緯駿 Jan. 6
Esko Ukkonen, "Algorithm for Approximate String Matching", Information and Control, Vol. 64, Nos. 1-3, January/ February/ March 1985 安興彥 Jan. 6
Maxime Crochemore, Costas S. Iliopoulos,and M. Sohel Rahman, "Optimal prefix and suffix queries on texts", Information Processing Letters 108 (2008) 320–325 彭永興 Jan. 13
Kang-Ping Wang, Lan Huang, Chun-Guang Zhou,and Wei Pang, "PARTICLE SWARM OPTIMIZATION FOR TRAVELING SALESMAN PROBLEM", Proceedings of the Second International Conference on Machine Learning and Cybernetics,'Xi'an, 2-5 November 2003 翁祥益 Jan. 13
Shakhar Smorodinsky."A note on the online First-Fit algorithm for coloring k-inductive graphs".Information Processing Letters 109 (2008) 44–45 林志穎 Jan. 20
  顏欣偉 Jan. 20   
Hans-Peter Lenhof and Michiel Smid . "Using Persistent Data Structures for Adding Range Restrictions to Searching Problems" RAIRO Theoretical Informatics and Applications, Vol. 28, pp. 25-49, 1994 曾球庭 Feb. 3 N/A
Yu-Ching Chen.1 Yeong-Shin Lin,2 Chih-Jen Lin,3 and Jenn-Kang Hwang1,2 . "Prediction of the Bonding States of Cysteines Using the Support Vector Machines Based on Multiple FeatureVectors and Cysteine State Sequences"PROTEINS: Structure, Function, and Bioinformatics 55:1036–1042 (2004) 鐘緯駿 Feb. 3 N/A
Banghe Li , Yuefeng Shen , Bo Li. "A new algorithm for computing the minimum Hausdorff distance between two point sets on a line under translation"Information Processing Letters 106 (2008) 52–58 陳紘昕 Feb. 3 N/A

Christina Leslie , Eleazar Eskin , Adiel Cohen , Jason Weston and William Stafford Nobley . " Mismatch string kernels for discriminative protein classification".Bioinformatics Advance Access published January 22, 2004

何秋誼 Feb. 10

Guillaume Blin, Guillaume Fertin,Danny Hermelin, and Stèphane Vialette,"Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints".31st International Workshop, WG 2005, Metz, France, June 23-25, 2005

 陳俊仁  Feb. 17    

 M. Crochemore & W. Rytter. "Rapid Identification of Repeated Patterns in Strings, Arrays and Trees (Karp, Miller and Rosenberg, 1972)" Efficient Algorithms on Texts, 1997– Section 8.1   KMR Algorithm

 安興彥   Mar. 4 N/A
  顏欣偉 Mar. 4  
I. Krasikov, S.D. Noble."Finding next-to-shortest paths in a graph"Information Processing Letters 92 (2004) 117–119 劉洙愷 Mar. 4
I. Krasikov, S.D. Noble."Finding next-to-shortest paths in a graph"Information Processing Letters 92 (2004) 117–119 劉洙愷 Mar. 11
Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, M. Sohel Rahman and Tomasz Waleń,"Improved algorithms for the range next value problem and applications",Symposium on Theoretical Aspects of Computer Science (STAC) 2008 Bordeaux, France, pp. 205-216, 2008. 彭永興 Mar. 17
   鐘緯駿 Mar. 17  
Enrique Romero and Josep María Sopena,"Performing Feature Selection With Multilayer Perceptrons",IEEE Transaction on Neural Networks,Vol. 19, No. 3, March 2008 何秋誼 Mar. 24
Chih-Huai Cheng, Hsiao-Fei Liu, Kun-Mao Chao,"Optimal algorithms for the average-constrained maximum-sum segment problem",Information Processing Letters 109 (2009) 171–174 林志穎 Mar. 24
Chih-Huai Cheng, Hsiao-Fei Liu, Kun-Mao Chao,"Optimal algorithms for the average-constrained maximum-sum segment problem",Information Processing Letters 109 (2009) 171–174 林志穎 Apr. 1
C.-F. Huang, J. Kaur, A. Maguitman and L. M. Rocha,"Agent-Based Model of Genotype Editing",Evolutionary Computation,Vol. 15, No. 3, pp. 253-289, 2007 安興彥 Apr. 1
 Shisheng Li, Guangzhong Sun, Guoliang Chen,"Improved algorithm for finding next-to-shortest paths",Information Processing Letters 92(2006) 192–194  劉洙愷 Apr. 8 
Yushan Zhu,"Mixed-Integer Linear Programming Algorithm for a Computational Protein Design Problem", Ind. Eng. Chem. Res. 2007, 46, 839-845 陳俊仁 Apr. 8
 P.Fernandez-Blanco, D.Bodas-Sagi, F.Soltero, J.I.Hdalgo,"Technical Market Indicators Optimization using Evolutionary Algorithm",Proceedings of the 2008 GECCO conference companion on Genetic and evolutionary computation, Atlanta, USA, July 12-16, 2008 陳紘昕 Apr. 8
Mira Gonen , Yuval Shavitt,"A theta(logn)-approximation for the set cover problem with set ownership",Information Processing Letters 109 (2009) 183–186 林志穎 Apr. 22
 Depei Bao, Zehong Yang,"Intelligent stock trading system by turning point confirmingand probabilistic reasoning",Expert Systems with Applications 34 (2008) 620–627 陳紘昕 Apr. 22
Sebastian Deorowicz, "An Algorithm for Solving the Longest Increasing Circular Subsequence Problem", Information Processing Letters, Vol. 109, pp. 630-634, 2009 曾球庭 Apr. 29
Jianlin Cheng and Pierre Baldi, "A machine learning information retrieval approach to protein fold recognition", Bioinformatics, vol. 22, no. 12, pp. 1456-1463, 2006 陳俊仁 Apr. 29
Devi Parikh and Robi Polikar,"An Ensemble-Based Incremental Learning Approach to Data Fusion",IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART B: CYBERNETICS, VOL. 37, NO. 2, APRIL 2007 何秋誼 May 6
Jorgen Bang-Jensen Gegory Gutin,"Digraphs Theory, Algorithms and Applications",Flows in Networks 劉洙愷 May 6
Esther M. Arkin, Sang Won Baeb, Alon Efratc, Kazuya Okamotod, Joseph S.B. Mitchell ,Valentin Polishchuk,"Geometric stable roommates",Information Processing Leters 109 (2009) 219–224 林志穎 May 19
Sitao Wu and Yang Zhang,"LOMETS: A local meta-threading-server for protein structure prediction",Nucleic Acids Research, 2007, Vol. 35, No. 10 陳俊仁 May 19  
Sheng-Hsun Hsu, JJ Po-An Hsieh, Ting-Chih Chih,Kuei-Chu Hsu,"A two-stage architecture for stock price forecasting by integrating self-organizing map and support vector regression ",Expert Systems with Applications, Vol36(2009), PP. 7947-7951 陳紘昕 May 19
Dong K. Kim, Junha Jo and Heejin Park,"A Fast Algorithm for Constructing Suffix Arrays for Fixed-Size Alphabets",Lecture Notes in Computer Science, Vol. 3059,pp. 301-314, 2004 安興彥 May 26
Maw-Shang Chang, Hsiao-Han Chung, Chuang-Chieh Lin,"An improved algorithm for the red-blue hitting set problem with the consecutive ones property",The 26th Workshop on Combinatorial Mathematics and Computation Theory,pp. 15–20, Chiayi, Taiwan, 2009. 劉洙愷 May 26  
Yen-Lin Huang, Cheng-Chen Huang, Chuan-Yi Tang and Chin-Lung Lu,"An Improved Algorithm for Sorting by Block-Interchanges Based on Permutation Groups",The 26 th Workshop on Combinatorial Mathematics and Computation Theory, PP. 9-14, Chiayi, Taiwan, Apr. 24-25, 2009 陳紘昕 June 2  
 J. J. Liu, Y. L. Wang, C. J. Hsu, and S. F. Yu,"The Composition Problem",The 26th Workshop on Combinatorial Mathematics and Computation Theory 曾球庭 June 9  
Chia-Wei Lu, Chun-Yuan Lin, Chuan-Yi Tang, Wing-Kai Hon,"An algorithm for the multiple patterns approximate string matching problem"The 26th Workshop on Combinatorial Mathematics and Computation Theory 林志穎 June 9
Adam Zemla, "LGA: a method for finding 3D similarities in protein structures", Nucleic Acids Research, 2003, Vol. 31, No. 13 陳俊仁 June 23
Eunsang Kim, Kunsoo Park,"Improving multikey Quicksort for sorting strings with many equal elements",Information Processing Letters 109 (2009) 454–459 劉洙愷 June 23
Jar-Long Wang, Shu-Hui Chan,"Trading rule discovery in the US stock market: An empirical study",Expert System with Applications, Vol36(2009), pp. 5450-5455 陳紘昕 June 23  
Ludmila I. Kuncheva,"Fuzzy Versus Nonfuzzy in Combining Classifiers Designed by Boosting",IEEE TRANSACTIONS ON FUZZY SYSTEMS,VOL. 11, NO. 6, Dec. 2003 何秋誼 June 30 N/A
Pier Luigi Martelli, Piero Fariselli and Rita Casadio,"Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network",Proteomics 2004, 4, 1665–1671  DOI 10.1002/pmic.200300745 林志穎 June 30
Julian Lee, Seung-Yeon Kim, Jooyoung Lee, "Protein structure prediction based on fragment assembly and parameter optimization", Biophysical Chemistry 115 (2005) 209 214 陳俊仁 July 14
Tun-Jen Chang, Sang-Chin Yang, Kuang-Jung Chang,"Portfolio optimization problems in different risk measures using genetic algorithm",Expert Systems with Applications, Vol36(2009), pp. 10529-10537 陳紘昕 July 14
Liuling Dai, "An Aggressive Algorithm for Multiple String Matching", Information Processing Letters, Vol. 109, pp. 553–559, 2009 曾球庭 July 21
Jianlin Cheng, Hiroto Saigo, and Pierre Baldi,"Large-Scale Prediction of Disulphide Bridges Using Kernel Methods, Two-Dimensional Recursive Neural Networks, and Weighted Graph Matching",Structure, Function, and Bioinformatics 62:617–629 (2006) 林志穎 July 21
Hamed Soleimani, Hamid Reza Golmakani, Mohammad Hossein Salimi,"Markowitz-based portfolio selection with minimum transaction lots, cardinality constraints and regarding sector capitalization using genetic algorithm",Expert Systems with Applications, Vol 36(2009), pp. 5058-5063 陳紘昕 July 28  
Gabriela Minetti, Enrique Alba, Gabriel Luque,"Seeding strategies and recombination operators for solving the DNA fragment assembly problem", Information Processing Letters 108 (2008) 94–100 劉洙愷 July 28
Rotem Rubinstein and Andras Fiser,"Predicting disulfide bond connectivity in proteins by correlated mutations analysis",10.1093/bioinformatics/btm637   Vol. 24 No. 4. 2008, pages 498–504 林志穎 Aug. 4
Ludmila I. Kuncheva and Christopher J. Whitaker,"Measures of Diversity in Classifier Ensembles and Their Relationship with the Ensemble Accuracy",Machine Learning,VOL. 51, pp. 181-207, 2003 何秋誼 Aug. 4
Julian Lee, Seung-Yeon Kim, Keehyoung Joo,Ilsoo Kim, and Jooyoung Lee, "Prediction of Protein Tertiary Structure Using PROFESY, a Novel Method Based on Fragment Assembly and Conformational Space Annealing", PROTEINS: Structure, Function, and Bioinformatics 56:704714(2004) 陳俊仁 Aug. 10
Jiah-Shing Chena, Jia-Li Houb, Shih-Min Wua, Ya-Wen Chang-Chiena,"Constructing investment strategy portfolios by combination genetic algorithms",Expert Systems with Applications, Vol. 36(2009), pp. 3824-3828 陳紘昕 Aug. 10
Chih-Hao Lu,Yu-Ching Chen,Chin-Sheng Yu,and Jenn-Kang Hwang,"Predicting Disulfide Connectivity Patterns",Structure, Function, and Bioinformatics 67:262–270 (2007) 林志穎 Aug. 28
J. Garcia-Nieto , E. Alba, L. Jourdan, E.Talbi,"Sensitivity and specificity based multiobjective approach for feature selection",Information Processing Letters 109 (2009) 887–896 劉洙愷 Aug. 28
Ting-Lan Chiu and Richard A Goldstein, "Optimizing energy potentials for success in protein tertiary structure prediction", Folding and Design Volume 3, Issue 3, June 1998, Pages 223-228 陳俊仁 Sept. 1
John Moody, Matthew Saffell,"Learn to trade via direct reinforcement",IEEE Transactions on Neural Networks, Vol. 12, No. 4, July 2001, PP. 875-889 陳紘昕 Sept. 1
Alberto Apostolico, Laxmi Parida, Simona E. Rombo, "Motif Patterns in 2D", Theoretical Computer Science Vol. 390, pp. 40–55, 2008 曾球庭 Sept. 8
ALESSIO CERONI, PAOLO FRASCONI , ANDREA PASSERINI AND ALESSANDRO VULLO,'Predicting the Disulfide Bonding State of Cysteines with Combinations of Kernel Machines",Journal of VLSI Signal Processing 35, 287–295, 2003 林志穎 Sept. 8
Xiaojing Yu, Jianping Cao, Yudong Cai,Tieliu Shi, Yixue Li.,"Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines",Journal of Theoretical Biology 240 (2006) 175–184 劉洙愷 Sept. 8
Ravi Gupta, Ankush Mittal, and Kuldip Singh,"A Time-Series-Based Feature Extraction Approach for Prediction of Protein Structural Class",EURASIP Journal on Bioinformatics and Systems Biology,VOL. 2008 何秋誼 Sept. 15
Jean-Yves Potvin, Patrick Soriano, Maxime Vallee,"Generating trading rules on the stock markets with genetic programming",Computers & Operations Research, Vol. 31(2004), PP. 1033-1047 陳紘昕 Sept. 15
  陳俊仁 Sept. 29   
Jiang-Ning Song, Ming-Lei Wang, Wei-Jiang Li and Wen-Bo Xu,"Prediction of the disulfide-bonding state of cysteines in proteins based on dipeptide composition",Biochemical and Biophysical Research Communications 318 (2004) 142–147 林志穎 Sept. 29
Ran Bi, Yanhong Zhou, Feng Lu,Weiqiang Wang,"Predicting Gene Ontology functions based on support vector machines and statistical significance estimation",Neurocomputing 70 (2007) 718–725 劉洙愷 Sept. 29
Joseph S. B. Mitchell,"A Geometric Shortest Path Problem with Application to Computing a Longest Common Subsequence in Run-Length Encoded Strings",Technical Report, Dept. of Applied Mathematics, SUNY Stony Brook, pp. 1-3, 1997. 安興彥 Oct. 6  
Shingo Mabu, Kotaro Hirasawa, Jinglu Hu,"A Graph-Based Evolutionary Algorithm: 
Genetic Network Programming(GNP) and Its Extension Using Reinforcement Learning",Evolutionary Computation 15(3), pp. 369-398
陳紘昕 Oct. 6

Chao-Chun Chuang, Chun-Yin Chen, Jinn-Moon Yang, Ping-Chiang Lyu, and Jenn-Kang Hwang, "Relationship Between Protein Structures and Disulfide-Bonding Patterns", PROTEINS: Structure, Function, and Bioinformatics 53:1–5 (2003) 陳俊仁 Oct. 13
M.H. Mucchielli-Giorgi, S. Hazout, and P. Tufféry, "Predicting the Disulfide Bonding State of Cysteines Using Protein Descriptors", PROTEINS: Structure, Function, and Genetics 46:243–249 (2002) 林志穎 Oct. 13
Pufeng Du, Tao He, Yanda Li,"Prediction of C-to-U RNA editing sites in higher plant mitochondria using only nucleotide sequence features",Biochemical and Biophysical Research Communications 358 (2007) 336–341 劉洙愷 Oct. 13
Yan Chen, Shingo Mabu, Etsushi Ohkawa, Kaoru Shimada, Kotaro Hirasawa,"A portfolio optimization model using Genetic Network Programming with Control nodes",Expert Systems with Application 36 (2009), p.p. 10735-10745 陳紘昕 Oct. 28
Miklos Bona, Ryan Flynn, "The average number of block interchanges needed to sort a permutation and a recent result of Stanley", Information Processing Letters 109 (2009) 927–931 陳愷瑜 Oct. 28
Miklos Bona, Ryan Flynn, "The average number of block interchanges needed to sort a permutation and a recent result of Stanley", Information Processing Letters 109 (2009) 927–931 陳愷瑜 Nov. 3
Joong Chae Na, Dong Kyue Kim and Jeong Seop Sim, "Finding the longest common nonsuperstring in linear time", Information Processing Letters, Vol. 109, pp. 1066-1070, 2009 林東建 Nov. 3
T.W. Barlow, W.G. Richards, "Reduced molecular representations and their role in protein structure prediction", Journal of Molecular Structure (Theochem) 398-399 (1997) 陳俊仁 Nov. 10
Reiji Teramoto, Mikio Aoki, Toru Kimura, Masaharu Kanaoka, "Prediction of siRNA functionality using generalized string kernel and support vector machine", FEBS(Federation of European Biochemical Societies ) Letters 579 (2005) 2878–2882 劉洙愷 Nov. 10
Samad Jahandideh, Somayyeh Hoseini, Mina Jahandideh, Afsaneh Hoseini, Ali Salehzadeh Yazdi, "Analysis of factors that induce cysteine bonding state", Computers in Biology and Medicine 39 (2009) 332 - 339 林志穎 Nov. 17
Ming-Chi Lee, "Using support vector machine with a hybrid feature selection method to the stock trend prediction", Expert Systems with Applications 36 (2009), pp. 10896-10904 陳紘昕 Nov. 17
Peter Brass, Hyeon-Suk Na, "Finding the maximum bounded intersection of k out of n halfplanes", Information Processing Letters 110 (2010) 113–115 王重傑 Nov. 17
Daniel Andersson, "Hashiwokakero is NP-complete", Information Processing Letters 109 (2009) 1145–1146 陳愷瑜 Nov. 24
Bang Ye Wu, "An optimal algorithm for the maximum-density path in a tree",  Information Processing Letters 109(2009) 975-979 周孝岷 Nov. 24
Bang Ye Wu, "An optimal algorithm for the maximum-density path in a tree",  Information Processing Letters 109(2009) 975-979 周孝岷 Dec. 1
Na Liu and Tianming Wang, "A method for rapid similarity analysis of RNA secondary structures", BMC Bioinformatics 2006, 7:493 何秋誼 Dec. 1
Marc Morig, Dieter Rautenbach, Michiel Smid, and Jan Tusch, "An Ω(n logn) lower bound for computing the sum of even-ranked elements", Information Processing Letters, Vol. 109, pp. 955–956, 2009 林東建 Dec. 1
C.Z. Cai, W.L. Wang, L.Z. Sun, Y.Z. Chen, "Protein function classification via support vector machine approach", Mathematical Biosciences 185 (2003) 111-122 劉洙愷 Dec. 8
Hans-Peter Lenhof and Michiel Smid, "Using Persistent Data Structures for Adding Range Restrictions to Searching Problems", RAIRO Theoretical Informatics and Applications, Vol. 28, pp. 25-49, 1994 曾球庭 Dec. 8

J.C. Calvo, J. Ortega, M. Anguita, J.M. Urquiza,and J.P. Florido, "Protein Structure Prediction by Evolutionary Multi-objective Optimization: Search Space Reduction by Using Rotamers", IWANN 2009, Part I, LNCS 5517, pp. 861–868, 2009.

陳俊仁 Dec. 22
Qinghua Wen, Zehong Yang, Yixu Song, Peifa Jia, "Automatic stock decision support system based on box theory and SVM algorithm", Expert Systems with Applications 37 (2010), pp. 1015-1022 陳肱昕 Dec. 22
Peter Brass, Hyeon-Suk Na, "Finding the maximum bounded intersection of k out of n halfplanes", Information Processing Letters 110 (2010) 113–115 王重傑 Dec. 29
Leonid Libkin, Cristina Sirangelo, "Disjoint pattern matching and implication in string", Information Processong Letters 110 (2010) 142 - 147 周孝岷 Dec. 29
                   

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018