Bioinformatics and Computation

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2012年

Presentation file introducer date paper video
Sergi Elizalde and Peter Winkler, "Sorting by Placement and Shift", Proceedings of the twentieth Annual ACM-SIAM Symposium on Discrete Algorithms, pp. 68-75, 2009 曾球庭 Jan. 2
Ren Ng, "DIGITAL LIGHT FIELD PHOTOGRAPHY", A dissertation submitted to the department of computer science and the committee on graduate studies of Stanford university, July, 2006 李承翰 Jan. 2
Paul R. Komarek, Andrew W. Moor. "Fast Robust Logistic Regression for Large Sparse Datasets with Binary Outputs". Ninth International Workshop on Artificial intelligence and Statistics ,January 3-6, 2003 陳紘昕 Jan. 9
Yu-Ching Chen (陳玉菁) and Jenn-Kang Hwang (黃鎮剛). "Prediction of Disulfide Connectivity from Protein Sequences". 國立交通大學生物資訊所博士論文, 2007 陳泓宇 Jan. 9
Nir London, Dana Movshovitz-Attias, and Ora Schueler-Furman. "The Structural Basis of Peptide-Protein Binding Strategies". Structure 18, 188-199, February 10, 2010 郭奕浦 Feb. 6
Joan Segura, Pamela F Jones and Narcis Fernandez-Fuentes. "Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams". BMC Bioinformatics 2011 李承翰 Feb.13
Michael H. Goldwasser, Ming- Yang Kao, Hseuh- I Lu. "Linear Time Algorithm For Computing Maximum Density Sequence With Bioinformatics Applications". Journal of computer and system sciences volume 70 p128-p144 班法 Feb.13
Thomas Fober, Marco Mernberger, Gerhard Klebe and Eyke Hullermeier. "Efficient Similarity Retrieval for Protein Binding Sites Based on Histogram Comparison". 2010 German Conference on Bioinformatics (GCB 2010, Sept. 20 - Sept. 22), pp. 51-59, Braunschweig Germany 戴君潔 Feb.21
Wenjiang J. Fu, Raymond J. Carroll and Suojin Wang. "Estimating misclassification error with small samples via bootstrap cross-validation". BIOINFORMATICS Vol. 21, no. 9, 2005, pp. 1979–1986 何秋誼 Feb.21
Jian Qiu, Will Sheffler, David Baker and William Stafford Noble. "Ranking predicted protein structures with support vector regression". Proteins ,2008 May, p.p 1175-1182 陳允軒 Feb.29
Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Thomas Madej* and Anna R. Panchenko*. "Inferred Biomolecular Interaction Server —a web server to analyze and predict protein interacting partners and binding sites". Nucleic Acids Research, 2010, Vol. 38, Database issue, D518–D524 郭奕浦 Feb.29
黃進南. "Prediction of Protein Tertiary Structure-Using Support Vector Machine". 樹德科技大學 資訊管理研究所 碩士學位論文,2006 吳欣芳 Feb.29
Luís M.S. Russo. "Monge properties of sequence alignment". Theoretical Computer Science, Vol. 423, pp. 30–49, 2012 曾球庭 Mar.6
Xin Li, Chi Zhou, Weimin Xiao, Peter C. Nelson. "Prefix Gene Expression Programming". Late Breaking Paper at the Genetic and Evolutionary Computation Conference(GECCO-2005), Washington, D.C., 2005. 李承翰 Mar.6
Chih-Ming Hsu. "A hybrid procedure for stock price prediction by integrating self-organizing map and genetic programming". Expert Systems with Applications 38 (2011) 14026–14036 黃章豪 Mar.13
Thomas Kämpke, Markus Kieninger and Michael Mecklenburg. "Efficient Primer Design Algorithms". Bioinformatics vol. 17 no. 3 Pages 214 225 班法 Mar.13
Dana Shapira, and James A. Storer. "Edit Distance with Block Deletions". Algorithms Open Access Journal Vol. 4, pp. 40-60, 2011 鄭凱原 Mar.21
Deanne W. Sammond, Dustin E. Bosch, Glenn L. Butterfoss, Carrie Purbeck, Mischa Machius, David P. Siderovski and Brian Kuhlman. "Computational Design of the Sequence and Structure of a Protein-Binding Peptide ". Journal of The American Chemical Society 2011, 133, 4190-4192 郭奕浦 Mar.28
Guantao Chen, Hai Deng , Yufeng Gui, Yi Pan and Xue Wang. "Cysteine separations profiles on protein secondary structure infer disulfide connectivity". IEEE International Conference on Granular Computing,pp. 663-665, 2006 陳泓宇 Mar.28
Marc Vincent, Andrea Passerini, Matthieu Labbe and Paolo Frasconi. "A Simplified Approach to Disulfide Connectivity Prediction from Protein Sequences". BMC Bioinformatics 2008, 9:20 戴君潔 Apr.17
Castrense Savojardo, Piero Fariselli, Monther Alhamdoosh, Pier Luigi Martelli, Andrea Pierleoni and Rita Casadio. "Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization". Bioinformatics Vol. 27 no. 16 2011, pages 2224-2230 郭奕浦 Apr.17
Juan JIMENEZ, Javier MOCHON, Jesus Sainz de AYALA and Faustino OBESO . "Blast Furnace Hot Metal Temperature Prediction through Neural Networks-Based Models". The Iron and Steel Institute of Japan 2004, Vol. 44, No.3, pp. 573–580 何秋誼 Apr.24
NG, R.. "Fourier Slice Photography". SIGGRAPH, 2005. 李承翰 Apr.24
Amir Ben-Dor, Richard Karp, Benno Schwikowski, Zhar Yakhini. "Universal DNA Tag Systems: A Combinational Design Scheme". JOURNAL OF COMPUTATIONAL BIOLOGY Volume 7, Numbers 3/4 Mary Ann Liebert, Inc. Pp. 503–519, 2000 班法 Apr.24
Cristina G. Fernandes, Carlos E. Ferreira, Christian Tjandraatmadja and Yoshiko Wakabayashi. "A Polyhedral Investigation of the LCS Problem and a Repetition-Free Variant". Proceedings of the 8th Latin American conference on Theoretical informatics, pp. 329-338, 2008 曾球庭 May.01
Lloyd ALLISON and Trevor I. DIX. "A Bit-string Longest-Common-Subsequence Algorithm". Information Processing Letters, Volume 23, Issue 6, 1986, pp. 305-310 戴君潔 May.01
Zongwu Cai(蔡宗武), Jiancheng Jiang(蔣建成), and Jingshuang Zhang(張靖爽). "A New Test for Superior Predictive Ability". Econometric Society Australasian Meeting (ESAM11) , Adelaide, Australia, July 4-7, 2011. 陳紘昕 May.08
Kuo-Hua Kao(高國華), Jou-Ming Chang(張肇明),Yue-Li Wang(王有禮), Justie Su-Tzu Juan(阮夙姿). "A Quadratic Algorithm for Finding Next-to-Shortest Paths in Graphs". Algorithmica (2011) 61:402–418 李承翰 May.08
Gary M. Ingersoll. "Multiple Comparisons of Means: A Practical Guide ". International Journal for Research in Education (IJRE), NO. 28, 2010 何秋誼 May.23
Maytham Safar. Dariush Ibrahimi. David Taniar. "Voronoi-based reverse nearest neighbor query processing on spatial networks". ADVANCE MOBILE COMPUTING AND MULTIMEDIA SYSTEMS. MULTIMEDIA SYSTEMS 2009 REGULAR PAPER 班法 June 13
E. Jacob, R. Sasikumar and K. N. R. Nair. "A fuzzy guided genetic algorithm for operon prediction". Bioinformatics Vol. 21 no. 8 2005, pages 1403–1407 郭奕浦 June 13
Aharon Ben-Tal and Arkadi Nemirovski. "Robust solutions of uncertain linear programs". Operations Research Letters, Vol. 25, pp. 1-13, 1999 陳紘昕 July 03
Xuanmin Guang(光宣敏), Yanzhi Guo(郭研芝), Jiamin Xiao(肖嘉敏), Xia Wang, Jing Sun, Wenjia Xiong(熊文佳), Menglong Li(李夢龍). "Predicting the State of Cysteines Based on Sequence Information". Journal of Theoretical Biology, Volume 267, Issue 3, 7 December 2010, Pages 312-318. 戴君潔 July 03
Ling-Chih Yao and Kuan-Yu Chen(陳冠宇). "Computing the Longest Common Subsequence of Multiple RLE Strings". Proceedings of the 29th Workshop on Combinatorial Mathematics and Computation Theory, pp. 228-234 曾球庭 July 17
Chia Wei Lu (呂嘉維) and R. C. T. Lee (李家同). "A New Filtration Method Based on the Locality Property for Approximate String Matching". The 29th Workshop on Combinatorial Mathematics and Computation Theory 郭奕浦 July 17
高爐風口影像識別技術開發,技術與訓練36 卷2期, 民國100 年6 月27~34 何秋誼 July 31
Emad Mabrouk, Abdel-Rahman Hedar, Masao Fukushima. "Memetic Programming with Adaptive Local Search Using Tree Data Structures". CSTST \'08 Proceedings of the 5th international conference on Soft computing as transdisciplinary science and technology, pages 258-264 李承翰 July 31
Yanzhi Guo(郭研芝), Lezheng Yu(余樂正), Zhining Wen(文志寧) and Menglong Li(李夢龍). "Using Support Vector Machine Combined with Auto Covariance to Predict Protein–protein Interactions from Protein Sequences". Nucleic Acids Research, Volume 36, No. 9, Pages 3025-3030, April 2008 戴君潔 Aug. 07
Wojciech Rytter. "Application of Lempel–Ziv factorization to the approximation of grammar-based compression". Theoretical Computer Science 302 (2003) 211 – 222 郭奕浦 Aug. 15
Kalyanmoy Deb, Associate Member, IEEE, Amrit Pratap, Sameer Agarwal, and T. Meyarivan. "A Fast and Elitist Multiobjective Genetic Algorithm: NSGA-II". IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, VOL. 6, NO. 2, APRIL 2002 李承翰 Aug. 15
Chen-Ming Hsu(許振銘), Chien-Yu Chen(陳倩瑜), Baw-Jhiune Liu(劉寶鈞), Chih-Chang Huang, Min-Hung Laio(廖敏宏), Chien-Chieh Lin(林千捷), and Tzung-Lin Wu. "Identification of hot regions in protein-protein interactions by sequential pattern mining". BMC Bioinformatics. 2007 許哲睿 Aug. 15
Marco Farina, Kalyanmoy Deb, and Paolo Amato. "Dynamic Multiobjective Optimization Problems: Test Cases, Approximations, and Applications". IEEE TRANSACTION ON EVOLUTIONARY COMPUTATION, VOL. 8, NO.5 PP. 425-442, 2004 陳紘昕 Aug. 21
Alexander Tiskin. "All semi-local longest common subsequences". Lecture Notes in Computer Science, 2006, Volume 3967/2006, 352-363 郭奕浦 Aug. 28
H. Fang, Q. Wang, Y.-C. Tu, and M. F. Horstemeyer. "An Efficient Non-dominated Sorting Method for Evolutionary Algorithms". Evolutionary Computation, vol. 16, pp. 355-384, 2008. 李承翰 Aug. 28
Sebastian Deorowicz. "Quadratic-time algorithm for a string constrained LCS problem". Information Processing Letters Vol.112 pp.423-426,2012 袁信全 Sept. 11
Sayyed RasoulMousavi , FarzanehTabataba. "An improved algorithm for the longest common subsequence problem". Computers & Operations Research Vol.39 pp512-520 ,2012 方鈞毅 Sept. 11
Mohamed Elhadi, Amjad AI-Tobi . "Refinements of Longest Common Subsequence Algorithm". ACS/IEEE International Conference on Computer Systems and Applications HAMMAMET TUNISIA, May 2010 許竣傑 Sept. 18
Jiamei Liu(劉佳梅), Suping Wu(吳素萍). "Research on Longest Common Subsequence Fast Algorithm". Consumer Electronics, Communications and Networks (CECNet), 2011 許哲睿 Sept. 21
Costas Iliopoulos, M. Sohel Rahman, Michal Voraček and Ladislav Vagner . "Computing Constrained Longest Common Subsequence for Degenerate Strings Using Finite Automata". Proceedings of the 12th international conference on Implementation and application of automata, pp. 309-311 曾球庭 Sept. 21
Mohammed Thaher and Tadao Takaoka. "An Efficient Algorithm for The k Maximum Convex Sums". Procedia Computer Science 1 (2012) 1475–1483 方鈞毅 Oct. 09
Young-Seon Jeong, Myong K. Jeong, Olufemi A. Omitaomu. "Weighted dynamic time warping for time series classification". Pattern Recognition, 2011 李承翰 Oct. 09
Zoltan Banko,  Janos Abonyi. "Correlation based dynamic time warping of multivariate time series". Expert Systems with Applications, Volume 39, Issue 17, 1 December 2012, Pages 12814–12823 許竣傑 Oct. 16
Patrick Cegielski, Irene Guessarian, Yury Lifshits, Yuri Matiyasevich. "Window Subsequence Problems for Compressed Texts". Lecture Notes in Computer Science Volume 3967, 2006, pp 127-136 郭奕浦 Oct. 16
Duan Li (李端) and Wan-Lung Ng. "Optimal Dynamic Portfolio Selection: Multiperiod Mean-Variance Formulation". Mathematical Finance, Vol. 10, No. 3 pp. 387–406, 2000 陳紘昕 Oct. 23
Arash Jalalian, Stephan K. Chalup. "GDTW-P-SVMs: Variable-length time series analysis using support vector machines ". Neurocomputing, 2012 李承翰 Oct. 23
Eric Lehmany, Ding Liu, Rina Panigrahyz, April Rasalay, Amit Sahai and abhi shelaty. "Approximating the Smallest Grammar:Kolmogorov Complexity in Natural Models". STOC \'02 Proceedings of the 34th annual ACM symposium on Theory of computing,Pages 792-801 郭奕浦 Oct. 30
Quanwei Zhang, Qinke Peng *, Tao Xu. "DNA Splice Site Sequences Clustering Method". Progress in Natural Science vol.19, pp.511-516, 2009 袁信全 Oct. 30
Fei Wang, Philip L.H. Yu and David W. Cheung. "Complex Stock Trading Strategy Based on Particle Swarm Optimization". 2012 IEEE Conference on Computational Intelligence for Financial Engineering & Economics 李承翰 Nov. 06
Abdullah N. Arslan and Omer Eğecioğlu. "Algorithms for the Constrained Longest Common Subsequence Problems". International Journal of Foundations of Computer Science,Vol. 16, No. 6 (2005) 1099-1109 許哲睿 Nov. 06
Mohammed Thaher, Tadao Takaoka . "Improved algorithms for the K overlapping maximum convex sum problem". Procedia Computer Science Volume 9, 2012, Pages 754–763 方鈞毅 Nov. 13
Minghui Jiang(江銘輝) . "Approximability of Constrained LCS". Journal of Computer and System Sciences Vol. 78, pp. 689–697, 2012 曾球庭 Nov. 20
Gonzalo Navarro, Ricardo Baeza-Yates . "Very Fast and Simple Approximate String Matching". Information Processing Letters,Volume 72, Issues 1-2, 29 October 1999, Pages 65-70 郭奕浦 Nov. 20
Michail Vlachos Jessica Lin Eamonn Keogh Dimitrios Gunopulos. "A Wavelet-Based Anytime Algorithm for K-Means Clustering of Time Series". In Proc. Workshop on Clustering High Dimensionality Data and Its Applications, 2003 李承翰 Nov. 27
Qinghua Wu, Jin-Kao Hao. "Coloring large graphs based on independent set extraction ". Computers & Operations Research 39 (2012) 283–290 許竣傑 Nov. 27
B. Venkataramana Kini and C. Chandra Sekhar. "Large margin mixture of AR models for time series classification". Applied Soft Computing, Vol. 13, pp. 361–371, 2013 何秋誼 Dec.04
Xiaohang Zhang*, Jiaqi Liu, Yu Du, and Tingjie Lv. "A novel clustering method on time series data". Expert Systems with Application, Vol. 38, pp. 11891-11900, 2011 陳紘昕 Dec.10
Daren Yu, Xiao Yu, Qinghua Hu, Jinfu Liu, Anqi Wu. "Dynamic time warping constraint learning for large margin nearest neighbor classification". Information Sciences 181 (2011) 2787–2796 李承翰 Dec.10
C. Orsenigo, C. Vercellis. "Combining discrete SVM and fixed cardinality warping distances for multivariate time series classification". Pattern Recognition, Volume 43, Issue 11, November 2010, Pages 3787–3794 袁信全 Dec.10
Abdulla-Al-Maruf, Hung-Hsuan Huang and Kyoji Kawagoe. "Time Series Classification Method Based on Longest Common Subsequence and Textual Approximation". Digital Information Management (ICDIM), 2012 Seventh p130-137 郭奕浦 Dec.17
Pierre-Francois Marteau. "Time Warp Edit Distance with Stiffness Adjustment for Time Series Matching". IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, VOL. 31, NO. 2,FEBRUARY 2009 方鈞毅 Dec.17
Krisztian Buza, Alexandros Nanopoulos, Lars Schmidt-Thieme. "Time-Series Classification based on Individualised Error Prediction". IEEE 13th International Conference on Computational Science and Engineering (CSE), 2010 許哲睿 Dec.17
Chien-Feng Huang(黃健峯), Bao Rong Chang(張保榮), Dun-Wei Cheng, and Chih-Hsiang Chang(張志向). "Feature Selection and Parameter Optimization of a Fuzzy-based Stock Selection Model Using Genetic Algorithms". International Journal of Fuzzy Systems, Vol. 14, No. 1, March 2012 李承翰 Dec.25
         

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018