Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018

2008~

Presentation file introducer date paper video
Kuan-Yu Chen and Kun-Mao Chao "On the Range Maximum-Sum Segment Query Problem",Discrete Applied Mathematics, Vol. 155, No. 16,pp. 2043-2052, 2007 w Jan. 02
SHISHIR SHAH and J. K. AGGARWAL,"INTRINSIC PARAMETER CALIBRATION PROCEDURE FOR A (HIGH-DISTORTION) FISH-EYE LENS CAMERA WITH DISTORTION MODEL AND ACCURACY ESTIMATION",Computer and Vision Research Center, Department of Electrical and Computer Engineering, ENS 522, The University of Texas at Austin, Austin, TX 78712-1084, U.S.A. v Jan. 02
Michael A. Bendera, Martin Farach-Coltonb,"The Level Ancestor Problem simplied",Theoretical Computer Science 321 (2004) 5 V 12 ^ÿ Jan. 09
Elena Rivas and Sean R. Eddy, "The Language of RNA: A Formal Grammar That Includes Pseudoknots", BIOINFORMATICS, Vol. 16 no. 4 2000 Pages 334V340 Jan. 09
Nikos Komodakis and Georgios Tziritas, "Image Completion Using Efficient Belief Propagation via Priority Scheduling and Dynamic Pruning", IEEE TRANSACTIONS ON IMAGE PROCESSING, Vol. 16, No. 11, Nov. 2007 Jan. 16
Eddie Cheng and Serge Kruk, "Routing in Unidirectional (n,k)-Star Graphs", Department of Mathematics and Statistics, Oakland University Jan. 16
Min-Sheng Lin,"Fast and Simple Algorithms to Count the Number of Vertex Covers in an Interval Graph",Information Processing Letters 102 (2007) 143-146 T Jan. 23
Min-Sheng Lin,"Fast and Simple Algorithms to Count the Number of Vertex Covers in an Interval Graph",Information Processing Letters 102 (2007) 143V146 βq Jan. 23
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghazali Talbi, "A Comparative Study of Parallel Metaheuristics for Protein Structure Prediction on the Computational Grid", International Parallel and Distributed Processing Symposium (IPDPS 2007), IEEE CNF, pp. 1~10. ipP Jan. 29
Long-Hui Wang, Juan Liu, Yan-Fu Lin, Huai-Bei Zhou,"Predicting Protein Secondary Structure by a Support Vector Machine Based on a New Coding Scheme", Genome Informatics 15(2): 181-190 (2004) CY Jan. 29
Mathilde Bouvel and Dominique Rossin, "Longest Common Pattern between Two Permutations", Pure Mathematics and Applications, 2007 yx Feb. 14
Liming Cai, Russell L. Malmberg and Yunzhou Wu, "Stochastic modeling of RNA pseudoknotted structures: a grammatical approach", BIOINFORMATICS, Vol. 19, Suppl. 1, 2003, pages i66Vi73 Feb. 14
Karl Nygren, "Stock Prediction V A Neural Network Approach", 28th March 2004 ve Feb. 14
Daniel Lopresti and Andrew Tomkins,"Block Edit Models for Approximate String Matching",Theoretical Computer Science,Vol. 181, pp. 159-179, 1997. w Feb. 20
Paola Bonizzoni, Gianluca Della Vendova, Giancarlo Mauri,"Experimenting an approximation algorithm for the LCS",Dipartimento di Informatica, Sistemistica e Comunicazione, Universit a degli Studi di Milano-Bicocca,
via Bicocca degli Arcimboldi 8, Milano, I-20126, Italy
v Feb. 20
Ilan Gronau, Shlomo Moran,"Optimal implementations of UPGMA and other common clustering algorithm",Information Processing Letters 104 (2007) 205-210 n@ Feb. 20
Richard Cole and Tsvi Kopelowitz, Moshe Lewenstein, "Suffix Trays and Suffix Trists: Structures for Faster Text Indexing", ^ÿ Feb. 27
A study of fault tolerance in star graph  Feb. 27
Evolutinary Algorithm to ab initio Protein Structure Prediction with Hydrophobic Interactions ipP Mar. 5
On the All-Farthest-Segments problem for a planar set of points T Mar. 5
An improved incremental training algorithm for support vector machines using active query Mar. 5
Shiyan Hu,"A linear time algorithm for max-min length triangulation of a convex polygon",Information Processing Letters 101 (2007), pp. 203 ~ 208 βq Mar. 12
Stock Market Prediction System with Modular Neural Networks ve Mar. 12
An Optimal Algorithm for the Maximum Two-chain Problem yx Mar. 19
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows Mar. 19
Predicting rRNA-, RNA-, and DNA-binding Proteins from Primary Structure with Support Vector Machines CY Mar. 19
Edit Distance of Run-Length Encoded Strings w Mar. 26
SAGA: sequence alignment by genetic algorithm v Mar. 26
A Parallel Algorithm for Computing Fourier Transforms on the Star Graph Mar. 26
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs ^ÿ Apr. 2
Recursive Support Vector Machine for Dimensionality Reduction n@ Apr. 2
R.L. Scot Drysdale, Asish Mukhopadhyay,"An O(n log n) algorithm for the all-farthest-segments problem
for a planar set of points",Information Processing Letters 105 (2008) 47
V51
T Apr.17
Chu Kiong Loo, Mandava Rajeswar, M.V.C. Rao,"Robust incremental growing multi-experts network",Applied Soft Computing 6 (2006) 139V153 Apr.17
Yun-Ling Liu and Lan Tao,"An Improved Parallel Simulated Annealing Algorithm Used for Protein Structure Prediction",Proceedings of the Fifth International Conference on Machine Learning and Cybernetics, Dalian, 13-16 August 2006 ipP Apr.17
Giancarlo Mauri, Giulio Pavesi,"Algorithms for Pattern Matching and Discovery in RNA Secondary Structure",Theoretical Computer Science, Vol. 335, pp. 29-51, 2005 yx Apr.23
Gautam Tevatia, Kavita Ganesan, Roshan Herbert, "Stock Buy-Sell Recommendation using Machine Learning" ve Apr.23
Yin-Te Tsai,"The constrained longest common subsequence problem",Information Processing Letters 88 (2003) 173V176 βq Apr. 30
J. J. Liu, Y. L. Wang and R. C. T. Lee,"Finding a Longest Common Subsequence between a Run-Length-Encoded String and an Uncompressed String",Journal of Complexity, Vol. 24, pp. 173-184, 2008 w May 7
Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang,"Design of Accurate Predictors for DNA-Binding Sites in Proteins Using Hybrid SVM-PSSM Method",BioSystems 90 (2007) 234-241 CY May 7
A Geometric Nearest Point Algorithm for the Efficient Solution of the SVM Classification Task n@ May 7
Maxime Crochemore and Lucian Ilie," Computin Longest Previous Factor in Linear time and applications", Information Processing Letters, Vol. 106, pp. 75-80, 2008 T May 28
Maxime Crochemore and Lucian Ilie," Computin Longest Previous Factor in Linear time and applications", Information Processing Letters, Vol. 106, pp. 75-80, 2008 ^ÿ May 28
Huseyin Ince and THeodore B. Trafalis, "Short Term Forecasting with Support Vector Machines and Application to stock price prediction", International Journal of General Systems iFirst article 2007 1-11 ve May 28
Shinya Katagiri and Shigeo Abe, "Incremental training of support vector machines using hyper-spheres", Pattern Recognition Letters 27 (2006) 1495-1507 Jun. 11
Yeim-Kuan Chang and Yung-Chieh Lin, "Dynamic Segment Trees for Ranges and Prefixes", IEEE Transactions on Computers, Vol. 56, No. 6, 2007 yx Jun. 11
Piyushkumar Mundra, Madhan Kumar, K. Krishna Kumar, Valadi K. Jayaramaan, Bhaskar D. Kulkarni, "Using Pseudo Amino Acid Composition to Predict Protein Subnuclear Localization: Approached with PSSM", Pattern Recognition Letters 28 (2007) 1610 - 1615 CY Jun. 18
Hiroshi Nagamochi and Kohei Okada, "Approximating the Minmax Rooted-tree Cover in a Tree", Information Processing Letters 104 (2007), pp. 173~178 βq Jun. 18
Yung-Hsing Peng,Chang-Biau Yang, Chiou-Ting Tseng and Chiou-Yi Hor,"Efficient Sparse Dynamic Programming for the Merged LCS Problem" ^ÿ July 3
Shyong Jian Shyu, Chun-Yuan Tsai, "Finding the longest common subsequence for multiple biological 
sequences by ant colony optimization", Computers & Operations Research 36 (2009) 73 V 91
T July 3
Steven Young and Tom Downs, "CARVE - A Constructive Algorithm for Real-Valued Examples", IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 9, NO. 6, NOVEMBER 1998, pp. 1180-1190 July 23
Md. Rafiul Hassan, Baikunth Nath, Michael Kirley, "A fusion model of HMM, ANN and
GA for stock market forecasting", Science Direct Expert Systems with Applications 33 (2007) 171V180
n@ July 23
Nicole Powell, Simon Y. Foo, and Mark Weatherspoon,"Supervised and Unsupervised Methods for Stock Trend Forecasting", 40th Southeastern Symposium on SystemTheory ve July 30
Yan Wang, Zhi-Dong Xue, Xiao-Hong Shi, and Jin Xu, "Prediction of k-turns in Proteins Using PSI-BLAST Profiles and Secondary Structure Information", Biochemical and Biophysical Research Communications 347 (2006) 574-580 CY July 30

Fernando C. Gomes, Claudio N. Meneses, Panos M. Pardalos,Gerardo Valdisio R. Viana, "A parallel multistart algorithm for the closest string problem",Computers & Operations Research 35 (2008) 3636 V 3643

T Aug. 6
Igor Averbakh, Oded Berman,"A Heuristic with Worst-case Analysis for Minimax Routing of Two Travelling Salesmen on a Tree",Discrete Applied Mathematics 68 (1996), pp. 17-32 βq Aug. 6
Timothy M. Chan,"Well-separated pair decomposition in linear time?",Information Processing Letters 107 (2008) 138V141 Bx_ Aug. 6
Igor Averbakh, Oded Berman,"A Heuristic with Worst-case Analysis for Minimax Routing of Two Travelling Salesmen on a Tree",Discrete Applied Mathematics 68 (1996), pp. 17-32 βq Aug. 13
Timothy M. Chan,"Well-separated pair decomposition in linear time?",Information Processing Letters 107 (2008) 138V141 Bx_ Aug. 13
M. S. Rahman and C. S. Iliopoulos,"Algorithms for Computing Variants of the Longest Common Subsequence Problem",ISAAC 2006, LNCS 4288, pp. 399-408, 2006 w Aug. 13
@ ^ÿ Aug. 20 @
Rohit Choudhry, and Kumkum Garg,"A Hybrid Machine Learning System for Stock Market Forecasting",PROCEEDINGS OF WORLD ACADEMY OF SCIENCE, ENGINEERING AND TECHNOLOGY VOLUME 29 MAY 2008 ISSN 1307-6884 ve Aug. 20
@ T Aug. 27 @
Min-Sheng Lin, Yung-Jui Chen, "Linear time algorithms for counting the number of minial vertex cover with minimum/maximum size in an interval graph", Information Processing Letters 107 (2008) 257-264 βq Aug. 27
Cheng-Lung Huang, Cheng-Yi Tsai, "A hybrid SOFM-SVR with a filter-based feature selection for stock market forecasting", Expert Systems with Applications xxx (2008) xxx-xxx n@ Aug. 27
Rohit Choudhry, and Kumkum Garg, "A Hybrid Machine Learning System for Stock Market Forecasting", PROCEEDINGS OF WORLD ACADEMY OF SCIENCE, ENGINEERING AND TECHNOLOGY VOLUME 29 MAY 2008 ISSN 1307-6884 ve Sept. 3
Tho Hoan Pham, Kenji Satou, and Tu Bao Ho, "Prediction and Analysis of ]-turns in Proteins by
Support Vector Machine"
CY Sept. 3
Robi Polikar, Lalita Udpa, Satish S. Udpa,and Vasant Honavar,"Learn++: An Incremental Learning Algorithm for Supervised Neural Networks",IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS, VOL. 31, NO. 4, NOVEMBER 2001, pp. 497-508 Sept. 3
Yoshifumi Sakai, "A linear space algorithm for computing a longest common increasing subsequence", Information Processing Letters 99 (2006) 203-207 βq Sept. 10
Yung-Keun Kwon and Byung-Ro Moon, Member, IEEE, "A hybrid Neurogenetic Approach for Stock Forecasting", IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 18, NO. 3, MAY 2007 n@ Sept. 10
Lindsay I Smith,"A tutorial on Principal Components Analysis" ve Sept. 17

van Emde Boas (vEB) Tree Revisited (I)

w Sept. 17
Hua-Sheng Chiu, Hsin-Nan Lin, Allan Lo, Ting-Yi Sung and Wen-Lian Hsu, "A Two-stage Classifier for Protein ]-turn Prediction Using Support Vector Machines", Proceedings of IEEE international Conference on Granular Computing (IEEE GrC), USA, May 10-12, 2006 CY Sept. 24
@ T Sept. 24 @
Martin Richards, "A note concerning the closest point pair algorithm", Information Processing Letters 82 (2002) 193-195 Bx_ Sept. 24
van Emde Boas (vEB) Tree Revisited (II) w Oct. 1
A large neighborhood search heuristic for the longest βq Oct. 8
@ ^ÿ Oct. 8 @
Costas S. Iliopoulos, M. Sohel Rahman, "Faster index for property matching", Information Processing Letters 105 (2008) 218-223 T Oct. 21
Ohad Lipsky, Ely Porat, "L1 pattern matching lower bound", Information Processing Letters 105 (2008) 141-143 Lӿo Oct. 21
Hierarchical Learning Architecture with Automatic Feature Oct. 28
Mariusz Milik, Andrzej Kolinsky, and Jeffrey Skolnick,"Algorithm for Rapid Reconstruction of Protein Backbone from Alpha Carbon Coordinates" CY Oct. 28
Yu-Ching Chen and Jenn-Kang Hwang, "Prediction of Disulfide Connectivity From Protein Sequences", PROTEINS: Structure, Function, and Bioinformatics 61:507V512 (2005) n@ Nov. 4
Todd Easton and Abhilash Singireddy, "A large neighborhood search heuristic for the longest common subsequence problem", J Heuristics (2008) 14: 271V283 βq Nov. 4
Dan E. Willard,"Log-logarithmic Worst Case Range Queries Are Possible in Space O(N)",Vol. 17, pp. 81-84, 1983 w Nov. 11
@ ^ÿ Nov. 25 @
@ Bx_ Nov. 25 @
Rui Kuang, Christina S. Leslie, and An-Suei Yang, "Protein Backbone Angle Prediction with Machine Learning Approaches", BIOINFORMATICS Vol. 20 10 2004, pages 1612-1621 CY Dec. 3 N/A
Piero Fariselli and Rita Casadio, "Prediction of Disulfide Connectivity in Proteins", Bioinformatics, Vol. 17, No. 10, Pages 957-964, 2001 n@ Dec. 3 N/A
Pao-Lien Lai , Hong-Chun Hsu, "The two-equal-disjoint path cover problem of Matching Composition Network", Information Processing Letters 107 (2008) 18V23 Lӿo Dec. 3 N/A
MOURAD ELLOUMI AND AHMED MOKADDEM,"A Heuristic Algorithm for the N-LCS Problem",Journal of the Applied Mathematics, Statistics and Informatics (JAMSI), 4 (2008), No. 1 βq Dec. 9
David Masip and Jordi Vitrià, "Shared Feature Extraction for Nearest Neighbor Face Recognition", IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 19, NO. 4, APRIL 2008 Dec. 9
@ T Dec. 9
@ @ Dec. 23 @ @
@ @ Dec. 23 @ @
@ @ Dec. 23 @ @
Chirs H.Q. Ding and Inna Dubchak, "Multi-class Protein Fold Recognition Using Support Vector Machines and Neural Networks", Bioinformatics Vol. 17 no. 4 2001 Pages 349-358 CY Dec. 29
Abdullah N. Arslan, "An algorithm with linear expected running time for string editing with substitutions and substring reversals", Information Processing Letters 106 (2008) 213V218 T Dec. 29

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018