Bioinformatics and Computation

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2011年

Presentation file introducer date paper video
Pascal Schweitzer, Patrick Schweitzer, "Connecting face hitting sets in planar graphs", Information Processing Letters, pp. 11–15, 2010 吳欣芳 Jan. 3
Enno Ohlebusch, Simon Gog, "Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem", Information Processing Letters, Vol. 110, pp. 123–128, 2010 鄭凱原 Jan. 3
B. Walczak and D. L. Massart, "Tutorial - Rough sets theory", Chemometrics and Intelligent Laboratory Systems, Vol. 47 (1999), pp. 1–16 陳紘昕 Jan. 11 N/A
Guilhem Faure, Aurelie Bornot, Alexandre G. de Brevern, "Analysis of protein contacts into Protein Units", Biochimie, Vol. 91, pp. 876–887, 2009 林東建 Jan. 11
Ping-Chen Lin(林萍珍), Po-Chang Ko(柯博昌), "Portfolio value-at-risk forecasting with GA-based extreme value theory", Expert Systems with Applications 36 (2009) pp. 2503–2512 周孝岷 Jan. 11
Alex A. Aravind, "Highly-fair bakery algorithm using symmetric tokens", Information Processing Letters, Vol. 110, pp. 1155-1060, 2010 陳允軒 Jan. 18
Sebastian Deorowicz, "An algorithm for solving the longest increasing circular subsequence problem", Information Processing Letters, Vol. 109, pp. 630-634, 2009 陳泓宇 Jan. 18
S. Deorowicz and S. Grabowski, "A Hybrid Algorithm for the Longest Common Transposition-Invariant Subsequence Problem", Computing and Informatics, Vol. 28, No. 5, pp. 729-744, 2009 曾球庭 Jan. 18
Keun-Joon Park and Minoru Kanehisa, "Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs", Bioinformatics Vol. 19 no. 13 2003, pages 1656–1663 陳愷瑜 Jan. 25
Maxime Crochemore and Lucian Ilie, "Computing Longest Previous Factor in linear time and applications", Information Processing Letters, Vol. 106, pp. 75-80, 2008 吳欣芳 Jan. 25
Juan Du, Beilei Lei, Jin Qin, Huanxiang Liu and Xiaojun Yao, "Molecular modeling studies of vascular endothelial growth factor receptor tyrosine kinase inhibitors using QSAR and docking", Journal of Molecular Graphics and Modelling, Vol. 27, pp. 642-654, 2009 Chuang You Chung Feb. 15
Eslam Pourbasheer, Siavash Riahi, Mohammad Reza Ganjali, Parviz Norouzi, "QSAR study on melanocortin-4 receptors by support vector machine", European Journal of Medicinal Chemistry, Vol. 45, pp. 1087-1093, 2010 陳泓宇 Feb. 15
Youfang Cao, Shi Liu, Lida Zhang, Jie Qin, Jiang Wang and Kexuan Tang(唐克軒), "Prediction of protein structural class with Rough Sets", BMC Bioinformatics 2006, 7:20 王重傑 Feb. 15
Filip Ginter, Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Jouni Jarvinen, and Tapio Salakoski, "Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis", Rough Sets and Current Trends in Computing 4th International Conference Lecture Notes in Computer Science, 2004, pages 780-785 楊子杰 Feb. 22
Michael A. Bender and Martin Farach-Colton, "The LCA Problem Revisited", In Proceeding of Latin American Theoretical Informatics (LATIN), Vol. 1776 of LNCS, SpringerVerlag (2000) pp. 88-94 鄭凱原 Feb. 22
Li-Pheng Khoo, Lian-Yin Zhai, "A prototype genetic algorithm-enhanced rough set-based rule induction system", Computers in Industry Volume 46(2001), p.p. 95-106 周孝岷 Mar. 1
Valerio Freschi, Alessandro Bogliolo, "Longest common subsequence between run-length-encoded strings: a new algorithm with improved parallelism", Information Processing Letters, Vol. 90, pp. 167-173, 2004 陳允軒 Mar. 1
Hakan Jonsson, "The Traveling Salesman Problem for lines in the plane", Information Processing Letters 82 (2002) 137–142 黃章豪 Mar. 1
Deepak Sarda, Gek Huey Chua, Kuo-Bin Li and Arun Krishnan, "pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties", BMC Bioinformatics 2005, 6:152 何秋誼 Mar. 8
Ruoying Chen(陳若英), Zhiwang Zhang(張志旺), Di Wu(吳荻), Peng Zhang(張鵬), Xinyang Zhang(張欣陽), Yong Wang(王永), Yong Shi(施勇), "Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming", Journal of Theoretical Biology, Vol. 269, pp. 174–180, 2011 林東建 Mar. 8
Maxime Crochemore, German Tischler, "Computing Longest Previous non-overlapping Factors", Information Processing Letters, Vol. 111, pp. 291-295, 2011 吳欣芳 Mar. 8
Ching-Hsue Cheng(鄭景裕), Tai-Liang Chen(陳泰良), Liang-Ying Wei (魏良穎), "A hybrid model based on rough sets theory and genetic algorithms for stock price forecasting", Information Sciences, vol. 180 (2010), pp. 1610-1629 陳紘昕 Mar. 15
Ming-Chao Chiang, Chun-Wei Tsai, Chu-Sing Yang, "A time-efficient pattern reduction algorithm for k-means clustering", Information Sciences, Vol. 181, pp. 716-731, 2011 陳泓宇 Apr. 19
Biing-Feng Wang(王炳豐), Jhih-Hong Ye(葉志鴻) and Song-Hsuan Lin(林嵩軒 ), "Output-Sensitive Algorithms for Finding the Nested Common Intervals of Two General Sequences" 曾球庭 Apr. 19
Chun-Wei Tsai, Ko-Wei Huang, Heng-Yao Hsu, Ming-Chao Chiang, and Chu-Sing Yang, "A Novel Topic Selection Algorithm Based On Word Distribution", International Journal of Innovative Computing, Information and Control Volume 6, Number 4, April 2010 陳允軒 May 3 N/A
Yanni Kouskoulas, Fawwaz T. Ulaby, and Leland E. Pierce, "The Bayesian Hierarchical Classifier and Its Application to Short Vegetation Using Multifrequency Polarimetric SAR", IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, VOL. 42, NO. 2, FEBRUARY 2004 何秋誼 May 3
Samuel Marguerat, Brian T. Wilhelm and Jurg Bahler, "Next-generation sequencing: applications beyond genomes" 黃章豪 May 3
Aapo Hyvarinen and Erkki Oja Neural Networks Research Centre Helsinki University of Technology, "Independent Component Analysis: Algorithm and Applications", Neural Networks, Vol. 13 (2000), pp. 411-430 陳紘昕 May 10
Rajeev K. Varshney, Spurthi N. Nayak, Gregory D. May and Scott A. Jackson, "Next-generation sequencing technologies and their implications for crop genetics and breeding", Trends in Biotechnology, Vol. 27, Issue 9, pp. 522-530, 12 August 2009 吳欣芳 May 10
T. W. Lam, W. K. Sung, S. L. Tam, C. K. Wong and S. M. Yiu, "Compressed indexing and local alignment of DNA", Vol. 24, No. 6, 2008, pages 791–797 doi:10.1093/bioinformatics/btn032 鄭凱原 May 10
J. J. Liu(劉嘉傑), G. S. Huang(黃光璿) and Y. L. Wang(王有禮), "A fast algorithm for finding the positions of all squares in a run-length encoded string", Theoretical Computer Science, Vol. 410, pp.3942-3948, 2009 曾球庭 May 17
Samuel Marguerat, Brian T. Wilhelm and Jurg Bahler, "Next-generation sequencing: applications beyond genomes" (補充) 黃章豪 May 24
K.N. Srinivasan, G.L. Zhang, A.M. Khan, J.T. August and V. Brusic, "Prediction of class I T-cell epitopes[抗原決定部位;抗原決定基]: evidence of presence of immunological[免疫學的] hot spots inside antigens[抗原]", Bioinformatics, Vol. 20, 2004, pages i297–i302 何秋誼 May 31
Chen-Ming Hsu, Chien-Yu Chen, and Baw-Jhiune Liu, "MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences", Nucleic Acids Research, Web Server issue, Vol. 34, pp. 356-361, 2006. 陳泓宇 May 31
Jay Walters, "The Black-Litterman Model in Detail", Working paper, available at SSRN: http://ssrn.com/abstract=1314585, (February 16, 2009), 51 pages 陳紘昕 June 15
Geir Kjetil Sandve and Finn Drablos, "A survey of motif discovery methods in an integrated framework", Biology Direct 2006 陳允軒 June 15
J. J. Liu(劉嘉傑), "Distinct squares in run-length encoded strings", Vol. 411, 2010, pages 4235–4241, Theoretical Computer Science 鄭凱原 June 15
Dervis Karaboga and Celal Ozturk, "A novel clustering approach: Artificial Bee Colony (ABC) algorithm", Applied Soft Computing, Vol.11, pp. 652–657 曾球庭 June 28
Li-Ping Ni, Zhi-Wei Ni, Ya-Zhuo Gao, "Stock trend prediction based on fractal feature selection and support vector machine", Expert Systems with Applications 38 (2011) 5569–5576 黃章豪 June 28
Ka Yee Yeung, Roger E. Bumgarner and Adrian E. Raftery, "Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data", BIOINFORMATICS Vol. 21, No. 10, 2005, pp. 2394–2402 何秋誼 July 5 N/A
Yin-Te Tsai(蔡英德), "The constrained longest common subsequence problem", Information Processing Letters Vol. 88, pp. 173-176, 2003 鄭凱原 July 5
Chen-Ming Hsu, Chien-Yu Chen, Ching-Chi Hsu, and Baw-Jhiune Liu, "Efficient Discovery of Structural Motifs from Protein Sequences with Combination of Flexible Intra- and Inter-block Gap Constraints", Pacific Area Conference on Knowledge Discovery and Data Mining (PAKDD) 2006, LNAI 3918, pp. 530 – 539, 2006 陳泓宇 July 19
Takayuki Okatani (岡谷准) and Koichiro Deguchi (出口光一郎) Graduate School of Information Sciences, Tohoku University (東北大學), Sendai, Japan, "On the Wiberg Algorithm for Matrix Factorization in the Presence of Missing Components", International Journal on Computer Vision, Vol. 72(3), pp. 329-337, 2007 陳紘昕 July 19
林家立, 任眉眉, "大學指考落點預測指標研究與實證分析 On the Study of Forecasting Indices After the College Entrance Examination with Real Data", June, 2008, 成功大學統計所碩士論文 陳允軒 July 25
Marco Dorigo, Mauro Birattari, and Thomas Stutzle, "Ant Colony Optimization Arti?cial Ants as a Computational Intelligence Technique", IEEE COMPUTATIONAL INTELLIGENCE MAGAZINE | NOVEMBER 2006 黃章豪 July 25
Andriy Kryshtafovych and Krzysztof Fidelis, "Protein structure prediction and model quality assessment", Drug Discovery Today, Vol. 14, Issues 7-8, pp. 386-393, April 2009 吳欣芳 July 25
Thomas K.F. Wong, T.W. Lam, Wing-Kin Sung(宋永健), and S.M. Yiu, "Structural Alignment of RNA with Complex Pseudoknot Structure", Journal of Computational Biology, Vol. 18, No. 1, pp. 97-108, 2011 曾球庭 Aug. 1
Szymon Grabowski , Simone Faroz, and Emanuele Giaquintaz, "String Matching with Inversions and Translocations in Linear Average Time (Most of the Time)", Information Processing Letters Vol. 111, pp. 516-520, 2011 鄭凱原 Aug. 1
Ouyan Shi, Huiyun Yang, Chunquan Cai, Jing Yang, Xin Tian, "Disulfide Bond Prediction Using Neural Network and Secondary Structure Information", The 2nd International Conference on. Bioinformatics and Biomedical Engineering, 2008. ICBBE 2008. 陳泓宇 Aug. 1
Miller Susan, Lesk Arthur M., Janin Joel and Chothia Cyrus, "The accessible surface area and stability of oligomeric proteins", Nature, Volume 328, Issue 6133, pp.834-836, 1987 何秋誼 Aug. 9
Akio ISHIGURO, Yuji WATANABE and Yoshiki UCHIKAWA, "An Immunological Approach to Dynamic Behavior Control for Autonomous Mobile Robots", IEEE International Conference on Intelligent Robots and Systems 95.’Human Robot Interaction and Cooperative Robots’, Proceedings. 1995, vol. 1, pp.495-500, 5-9 Aug., 1995. 陳允軒 Aug. 9
Domenico Cozzetto, Andriy Kryshtafovych, Anna Tramontano, "Evaluation of CASP8 model quality predictions", Proteins: Structure, Function, and Bioinformatics, Volume 77, Issue Supplement S9, pages 157–166, 2009 吳欣芳 Aug. 9
Donald J. Bemdt, James Clifford, "Using Dynamic Time Warping to Find Patterns in Time Series", AAAI94 workshop on knowledge discovery in databases?(1994) 359-370 黃章豪 Aug. 16
Eghbal G. Mansoori, Mansoor J. Zolghadri, Seraj D. Katebi, "A weighting function for improving fuzzy classification systems performance", Fuzzy Sets and Systems, Vol. 158 (2007), pp. 583-591 陳紘昕 Aug. 23
Lin-Yu Tseng, Shiau-Kuen Tsai and Hsuan-Hung Lin, "Disulfide Connectivity Prediction with Normalized Bond Vector", The 24th Workshop on Combinatorial Mathematics and Computation Theory, pp. 308-313, 2008 陳泓宇 Aug. 23
Kuo-Si Huang, Chang-Biau Yang, Kuo-Tsung Tseng, Hsing-Yen Ann, Yung-Hsing Peng, "Efficient algorithms for finding interleaving relationship between sequences", Information Processing Letters Vol. 105, pp. 188-193, 2008 鄭凱原 Aug. 23
Shaoning Pang, Seiichi Ozawa, and Nikola Kasabov, "Incremental Linear Discriminant Analysis for Classification of Data Streams", IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART B: CYBERNETICS, VOL. 35, NO. 5, OCTOBER 2005 陳允軒 Sept. 5
PIOTR ROTKIEWICZ, JEFFREY SKOLNICK, "Fast Procedure for Reconstruction of Full-Atom Protein Models from Reduced Representatios", Journal of Computational Chemistry, Volume 29, Issue 9, pages 1460–1465, 2008 吳欣芳 Sept. 5
DARIUSZ PLEWCZYNSKI, ANNA PHILIPS, MARCIN VON GROTTHUSS, LESZEK RYCHLEWSKI and KRZYSZTOF GINALSKI, "HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking" 李承翰 Sept. 5
DARIUSZ PLEWCZYNSKI, ANNA PHILIPS, MARCIN VON GROTTHUSS, LESZEK RYCHLEWSKI and KRZYSZTOF GINALSKI, "HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking" 李承翰 Sept. 13
Brian Pierce and Zhiping Weng(翁志萍), "A Combination of Rescoring and Refinement Significantly Improves Protein Docking Performance", Proteins, Vol. 72, No. 1, pp. 270-279, 2008 曾球庭 Sept. 13
Ozlem Gurunlu Alma, "Comparison of Robust Regression Methods in Linear Regression", International Journal of Contemporary Mathematical Sciences, Vol. 6, 2011, No. 9, p.409 - 421 何秋誼 Sept. 19
Pei-Chann Chang, Chin-Yuan Fan, Jun-Lin Lin and Jyun-Jie Lin, "Integrating a Piecewise Linear Representation Method with Dynamic Time warping system for Stock Trading Decision Making", Fourth International Conference on Natural Computation, 2008. ICNC 08. 黃章豪 Sept. 19
East Zhao, Hsuan-Liang Liu, Chi-Hung Tsai, Huai-Kuang Tsai, Chen-hsiung Chan and Cheng-Yan Kao, "Cysteine separations profiles on protein sequences infer disulfide connectivity", Bioinformatics, vol. 21, no. 8, pp. 1415–1420, 2005 陳泓宇 Sept. 26
Gad M. Landau , Eugene Myers , Michal Ziv-Ukelson, "Two algorithms for LCS Consecutive Suffix Alignment", Journal of Computer and System Sciences Vol. 73, 1095–1117, 2007 鄭凱原 Sept. 26
Chen-Chia Chuang, Shun-Feng Su, Member, IEEE, Jin-Tsong Jeng, Member, IEEE, and Chih-Ching Hsiao, "Robust Support Vector Regression Networks for Function Approximation With Outliers", IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 13, NO. 6, NOVEMBER 2002 陳允軒 Oct. 3
Haitham Hindi Palo Alto Research Center (PARC), Palo Alto, California, "A Tutorial on Convex Optimization", Proceedings of the American Control Conference, 2004, Boston, MA, USA, June 30 -July 2, 2004. 陳紘昕 Oct. 3
Thom Vreven, Howook Hwang, and Zhiping Weng, "Integrating atom-based and residue-based scoring functions for protein–protein docking", PROTEIN SCIENCE 2011 Vol 20:1576-1586. 郭奕浦 Oct. 17
Stewart E Moughon and Ram Samudrala, "LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates", BMC Bioinformatics, Vol. 12, pp. 368-381, 2011. 吳欣芳 Oct. 17
You-Min Ha, Sanghyun Park, Sang-Wook Kim, Jung-Im Won, Jee-Hee Yoon, "A stock recommendation system exploiting rule discovery in stock databases", Information and Software Technology 51 (2009) 1140–1149. 黃章豪 Oct. 17
Gad M. Landau , Eugene Myers , Michal Ziv-Ukelson, "Two algorithms for LCS Consecutive Suffix Alignment", Journal of Computer and System Sciences Vol. 73, 1095–1117, 2007. 鄭凱原 Oct. 24
Bo-Juen Chen, Chi-Hung Tsai, Chen-hsiung Chan, and Cheng-Yan Kao (高成炎), "Disulfide Connectivity Prediction with 70% Accuracy Using Two-Level Models", PROTEINS: Structure, Function, and Bioinformatics, Vol. 64, pp. 246–252, 2006. 陳泓宇 Oct. 31
Chiou-Ting Tseng, Chang-Biau Yang and Hsing-Yen Ann, "Efficient Algorithms for the Longest Common Subsequence Problem with Sequential Substring Constraints" 曾球庭 Oct. 31
M. Stone, "An Asymptotic Equivalence of Choice of Model by Cross-Validation and Akaike's Criterion", Journal of the Royal Statistical Society. Series B (Methodological), Vol. 39, No. 1(1977), pp. 44-47 何秋誼 Nov. 7
Candida Ferreira?, "Gene Expression Programming: A New Adaptive Algorithm for Solving Problems", Complex Systems, Vol. 13, issue 2: 87-129, 2001 陳允軒 Nov. 7
Daniel B. Roche, Stuart J. Tetchner and Liam J. McGuf?n, "The binding site distance test score: a robust method for the assessment of predicted protein binding sites", Bioinformatics Vol.26, no.22, 2010, pages 2920–2921 戴君潔 Nov. 7
Florian Lauck, Colin A. Smith, Gregory F. Friedland, Elisabeth L. Humphris and Tanja Kortemme, "RosettaBackrub—a web server for flexible backbone protein structure modeling and design", Nucleic Acids Research, Vol. 38, pp.569-575, 2010 吳欣芳 Nov. 14
"DIGITAL LIGHT FIELD PHOTOGRAPHY", A dissertation submitted to the department of computer science and the committee on graduate studies of Stanford university, Ren Ng, July 2006 李承翰 Nov. 14
Jonathon T Hill, Keith R Anderson, Teresa L Mastracci, Klaus H Kaestner and Lori Sussel, "Novel Computational Analysis of Protein Binding Array Data", BMC Bioinformatics 2011 Open Access Article Bamfa Ceesay Nov. 14
林文修, 林聖庭, 陳奕帆, "共演化機制在動態資產配置模型建構之研究", Proceedings of the 2011 Conference on Technologies and Applications of Artificial Intelligence (TAAI 2011) 黃章豪 Nov. 21
By Norden E. Huang(黃鍔), Zheng Shen, Steven R. Long, Manli C. Wu, Hsing H. Shih, Quanan Zheng, Nai-Chyuan Yen, Chi Chao Tung and Henry H. Liu, "The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis", Proceedings of the Royal Society London A, Vol. 454, pp. 903–995, 1998 陳紘昕 Nov. 21
Bo-Yi Wang(王柏易), Hsueh-I Lu(呂學一), "Two-dimensional homing sort", Information Processing Letters, Vol. 111, pp. 1067–1071, 2011 曾球庭 Nov. 28
Ayelet Butman, Revital Eres, Gad M. Landau, "Scaled and permuted string matching", Information Processing Letters Vol. 92, pp. 293-297, 2004 鄭凱原 Nov. 28
林柏豪, 黃健?, 陳建源, 林鈺峰, "植基於符號組之改良式BLIM 演算法", Proceedings of Workshop on AB, 2011 National Computer Symposium, pp. 108-119, Chiayi, Taiwan, Dec. 2-3, 2011. 陳泓宇 Dec. 5
"Evolving Accurate and Compact Classification Rules With Gene Expression Programming", IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, VOL. 7, NO. 6, DECEMBER 2003 陳允軒 Dec. 5
陳天盛, 羅英倉, 白敦文, "運用CUDA 平行處理技術實現蛋白質表面測地線特徵比對", 2011 National Computer Symposium p120-131 郭奕浦 Dec. 12
Janez Dem?ar, "Statistical Comparisons of Classifiers over Multiple Data Sets", Journal of Machine Learning Research, Vol. 7, 2006, pp.1–30 何秋誼 Dec. 12
陳明權, 林?庭, 羅英倉, 白敦文, "使用表面幾何特徵於蛋白質與配體結合位置之預測", 2011 National Computer Symposium (NCS 2011, Dec. 2 - Dec. 3), pp. 96-107, Chiayi, Taiwan, Dec., 2011. 戴君潔 Dec. 19
Tak-chung Fu, Fu-lai Chung, Robert Luk, Chak-man Ng, "Stock time series pattern matching: Template-based vs. rule-based approaches", Engineering Applications of Artificial Intelligence 20 (2007) 347–364 黃章豪 Dec. 19
Szu-Yu Chou (周思瑜), Chien-Hung Huang (黃建宏), Ka-Lok Ng (吳家樂), "Classification of Yeast Protein Complexes Using Topological and Physicochemical Features", National Computer Symposium, pp.10-16, 2011 吳欣芳 Dec. 19
Longtao He(???), Binxing Fang(方??), Jie Sui(隋杰), "The wide window string matching algorithm", Theoretical Computer Science Vol. 332, pp. 391-404, 2005 鄭凱原 Dec. 26
Halbert White, "A Reality Check for Data Snooping", Econometrica, Vol. 68, No. 5, pp. 1097-1126, 2000 陳紘昕 Dec. 26
         

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018