Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018


Presentation file introducer date paper video
Peter Brass, Hyeon-Suk Na, "Finding the maximum bounded intersection of k out of n halfplanes", Information Processing Letters 110 (2010) 113–115 王重傑 Jan. 5
Peilin Jia, Tieliu Shi, Yudong Cai and Yixue Li, "Demonstration of two novel methods for predicting functional siRNA efficiency",  BMC Bioinformatics Vol. 7 No. 1 1-10 劉洙愷 Jan. 5
Frederic Maffray, "Stable sets in k-colorable P5-free graphs", Information Processing Letters, Vol. 109, pp. 1235–1237, 2009  林東建 Jan. 5
Qiwen Dong[董啟文], Shuigeng Zhou[周水庚], and Jihong Guan[關佶紅], "A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation", Structural bioinformatics, Vol. 25 no. 20, 2009, pp. 2655–2662 何秋誼 Jan. 19 N/A
  陳俊仁 Jan. 19   N/A
Alain Bretto,Thierry Vallee, "A clique-covering sufficient condition for hamiltonicity of graphs", Information Processing Letters 109 (2009) 1156–1160 陳愷瑜 Jan. 19 N/A
Marcelo Barros de Almeida, Antônio de Pádua Braga, João Pedro Braga, "SVM-KM: speeding SVMs  learning with a  priori cluster selection and k-means", IEEE Transactions on Neural Networks 882-890, Volume: 20, Issue: 5, May 2009 林志穎 Jan. 26
Jiah-Shing Chen( 陳稼興), Chia-Lan Chang( 張嘉蘭 ),Jia-Li Hou( 侯佳利 ), Yao-Tang Lin( 林耀堂 ), "Dynamic proportion portfolio insurance using genetic programming with principal component analysis", Expert Systems with Applications, Vol. 35(2008), pp. 273-278 陳紘昕 Jan. 26
Hong-Wei Liu, "Predicting Non-protein-coding RNA Genes in Escherichia Coli Using SVM with Signature Descriptor", The 2nd International Symposium on Optimization and Systems Biology , pp. 287-293, Lijiang, China, 2008 劉洙愷 Jan. 26
林東建   Feb. 23     

Marc A. Marti-Renom, M.S. Madhusudhan,Andra′ s Fiser, Burkhard Rost, and Andrej Sali,"Reliability of Assessment of Protein Structure

Prediction Methods",Structure, Vol. 10, 435–440, March, 2002

陳俊仁 Feb. 23
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller and David J. Lipman,"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs",Nucleic Acids Research, 1997, Vol. 25, No. 17 3389–3402 林志穎 Mar. 3
Been-Chian Chiena( 錢炳全), Jung-Yi Lina( 林忠億),Tzung-Pei Hongb( 洪宗貝),"Learning discriminant functions with fuzzy attributes for classification using genetic programming",Expert Systems with Applications, Vol. 23(2002), pp. 31-37 陳紘昕 Mar.3
Lei Chen , Changhong Lu, Zhenbing Zeng,"A linear-time algorithm for paired-domination problem in strongly chordal graphs",Information Processing Letters 110 (2009) 20–23 周孝岷 Mar. 9

C.Z. Cai, L.Y. Han, Z.L. Ji, X. Chen and Y.Z. Chen,"SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence",3692–3697 Nucleic Acids Research, 2003, Vol 31, No, 13

劉洙愷 Mar. 9

Janne Korhonen, Petri Martinmaki, Cinzia Pizzi, Pasi Rastas and Esko Ukkonen,"MOODS: fast search for position weight matrix matches in DNA sequences",BIOINFORMATICS Vol. 25 no. 23 2009, pages 3181–3182

陳愷瑜 Mar. 9
J. Holub, W. F. Smyth, S. Wang,"Fast Pattern Matching on Indeterminate Strings",Journal of Discrete Algorithms, Vol. 6, pp. 37-50, 2008
曾球庭 Mar. 16
Jose Martinez Sotoca, Filiberto Pla,"Supervised feature selection by clustering using conditional mutual information-based distances",Pattern Recognition 43 (2010) 2068–2081
何秋誼 Mar. 23
Ming-Yen Lin(林明言), Sue-Chen Hsueh(薛夙珍) and Chia-Wen Chang(張家汶),"Mining Closed Sequential Patterns with Time Constraints",Journal of Information Science and Engineering 24, 33-46 (2008)
王重傑 Mar. 23
Mengjie Zhang, Will Smart,"Using Gaussian distribution to construct fitness functions in genetic programming for multiclass object classification",Pattern Recognition Letters, Vol. 27(2006), pp. 1266-1274
陳紘昕 Mar. 30
Yi Shi, Jianjun Zhou, David Arndt, David S Wishart and Guohui Lin,"Protein contact order prediction from primary sequences",BMC Bioinformatics, vol. 9, pp. 255, 2008
陳俊仁 Apr. 6
JI-CHERNG LIN(林基成), TETZ C. HUANG(黃哲志), CHENG-PIN WANG(王承斌)AND CHIH-YUAN CHEN(陳志遠),"A Self-Stabilizing Algorithm for Finding a Minimal Distance-2 Dominating Set in Distributed Systems",JOURNAL OF INFORMATION SCIENCE AND ENGINEERING, Vol. 24, pp. 1709-1718, 2008
林東建 Apr. 13
Costas S. Iliopoulos , M. Sohel Rahman,"New efficient algorithms for the LCS and constrained LCS problems",Information Processing Letters 106 (2008) 13–18
陳愷瑜 Apr. 13
O. Keller, T. Kopelowitz, and M. Lewenstein,"On the Longest Common Parameterized Subsequence",Lecture Notes in Computer Science, Vol. 5029, pp. 303-315, 2008
曾球庭 Apr. 13
Wei Huang, Yoshiteru Nakamori, Shou-Yang Wang,"Forecasting stock market movement direction with support vector machine",Computers & Operations Research 32 (2005) 2513–2522
周孝岷 Apr. 20
Chin-Sheng Yu, Chin-Jen Lin, and Jenn-Kang Hwang,"Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions",Protein Society 13: 1402–1406
劉洙愷 Apr. 20
Amihood Amir, Zvi Gotthilf , B. Riva Shalom,"Weighted LCS",Journal of Discrete Algorithms 20
王重傑 Apr. 27
Durga Prasad Muni, Nikhil R. Pal, and Jyotirmoy Das,"Genetic Programming for Simultaneous Feature Selection and Classifier Design",IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS, VOL. 36, NO. 1, FEBRUARY 2006
何秋誼 Apr. 27
Kiyoshi Izumi(和泉潔), Fujio Toriumi(鳥海不二夫), Hiroki Matusi, "Evaluation of automated-trading strategies using an artificial market",Neurocomputing, Vol. 72 (2009), pp. 3469-3476
陳紘昕 May 4
Kai Ming Ting and Ian H. Witten, "Issues in Stacked Generalization",Journal of Artificial Intelligence Research Volume 10, pages 271-289, 1999
林志穎 May 4
Chen-Ming Hsu, Chien-Yu Chen(陳倩瑜)and Baw-Jhiune Liu(劉寶鈞),"MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences",Nucleic Acids Research, 2008, Vol. 36, No. 4 1401
May 10
Guilhem Faure, Aure’lie Bornot, Alexandre G. de Brevern,"Review Protein contacts, inter-residue interactions and side-chain modelling",Biochimie, vol. 90, pp. 626-639, 2008
陳俊仁 May 10
Yoshifumi Sakai,"Computing the longest topological common subsequence of a symbol-wise totally ordered directed acyclic graph and a sequence",Theoretical Computer Science, Vol. 410, pp. 2759-2766, 2009
林東建 May 18
Yi-Ching Chen,"Algorithms for the Hybrid Constrained Longest Common Subsequence Problem",Department of Computer Science and Information Engineering,National Taiwan University, Taipei, Taiwan 106
楊子杰 May 25
Nikhil Bansal , Moshe Lewenstein , Bin Ma , kaizhong Zhang,"On the Longest Common Rigid Subsequence Problem",Algorithmica (2010) 56 :270-280
周孝岷 May 25
Svetlin A Manavski, and Giorgio Valle,"CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment",BMC Bioinformatics 2008, 9(Suppl 2):S10 doi:10.1186/1471-2105-9-S2-S10
陳愷瑜 June 1
Bing-Yu Sun[孫丙宇], Xiao-Ming Zhang[張曉明], Jiuyong Li[李洪奇], and Xue-Min Mao[毛學民],"Feature Fusion Using Locally Linear Embedding for Classification",IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 21, NO. 1, JANUARY 2010
何秋誼 June 7
Mensur Dlaki,"HHsvm: fast and accurate classification of profile–profile matches identified by HHsearch",Bioinformatics, Vol. 25, No. 23, pages 3071–3076, 2009
王重傑 June 7
Chia-Wei Lu(盧家偉), Chuan Yi Tang(唐傳一) and R. C. T. Lee,"A Progressive Strategy for DNA Resequencing Problem",The 27th Workshop on Combinatorial Mathematics and Computation Theory.pages 45-49
楊子杰 June 14
Eunseog Youn, Lars Koenig, Myong K. Jeong, Seung H. Baek ,"Support vector-based feature selection using Fisher’s linear discriminant and Support Vector Machine",Expert Systems with Applications 37 (2010) pp.6148–6156
周孝岷 June 14
Vera Afreixo, Carlos A. C. Bastos, Armando J. Pinho, Sara P. Garcia and Paulo J. S. G. Ferreira,"Genome analysis with inter-nucleotide distances",BIOINFORMATICS, Vol. 25, pp. 3064–3070, 2009 林東建 June 28
Saikat Chakrabarti, A. Prem Anand, Nitin Bhardwaj, Ganesan Pugalenthi and R. Sowdhamini,"SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs",Nucleic Acids Research, 2005, Vol. 33, Web Server issue 王重傑 June 28
Francesca Demichelis, Paolo Magni, Paolo Piergiorgi, Mark A Rubin and Riccardo Bellazzi,"A hierarchical Naive Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays",BMC Bioinformatics 2006, 7:514
何秋誼 July 19
Yixin Chen, Andrew Wan and Wei Liu,"A fast parallel algorithm for finding the longest common sequence of multiple biosequences",BMC Bioinformatics 2006, 7(Suppl 4):S4
陳愷瑜 July 19
Melek Acar Boyacioglu , Derya Avci ,"An Adaptive Network-Based Fuzzy Inference System (ANFIS) for the prediction of stock market return: The case of the Istanbul Stock Exchange",Expert Systems with Applications xxx (2010) xxx–xxx
周孝岷 July 19
D. Devetyarov, M. J Woodward, N. G Coldham, M. F Anjum and A. Gammer,"A New Bioinformatics Tool for Prediction with Confidence",The 2010 International Conference on Bioinformatics & Computational Biology
曾球庭 July 26
Chung-Yen Lin(林中彥), Chia-Hao Chin(金家豪), Hsin-Hung Wu(吳新宏), Shu-Hwa Chen(陳書華), Chin-Wen Ho(何錦文), and Ming-Tat Ko(高明達),"Hubba: hub objects analyzer—a framework of interactome hubs identification for network biology",Nucleic Acids Research, 2008, Vol. 36, Web Server issue pages 438-443
楊子杰 July 26
Fabrizio Angiulli and Annabella Astorino,"Scaling Up Support Vector Machines Using Nearest Neighbor Condensation",IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 21, NO. 2, FEBRUARY 2010, pp.351-357
何秋誼 Aug. 16
Nicholas Hamilton, Kevin Burrage, Mark A. Ragan, and Thomas Huber,"Protein Contact Prediction Using Patterns of Correlation",BIOINFORMATICS, Vol. 56, pp. 679–684, 2004
林東建 Aug. 16
Jiangning Song, Zheng Yuan, Hao Tan, Thomas Huber and Kevin Burrage,"Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure",Bioinformatics original paper, Vol. 23 no. 23 2007, pages 3147–3154
王重傑 Aug. 16
Deng-Yiv Chiu, Ping-Jie Chen,"Dynamically exploring internal mechanism of stock market by fuzzy-based support vector machines with high dimension input space and genetic algorithm",Expert Systems with Applications 36 (2009) 1240–1248
周孝岷 Aug. 23

Yang Zhang,"Progress and challenges in protein structure prediction",Current Opinion in Structural Biology 2008, 18:342–348
陳愷瑜 Aug. 23
Ho-Leung Chan(陳昊樑), Tak-Wah Lam(林德華), Wing-Kin Sung(宋永健), Siu-Lung Tam, Swee-Seong Wong,"Compressed Indexes for Approximate String Matching",Algorithmica, Vol. 58, No. 2, pp. 263-281, 2010
曾球庭 Aug. 30
Yih-Chii Hwang(黃奕綺) , Chen-Ching Lin(陳景林), Jen-Yun Chang(江俊彥), Hirotada Mori,Hsueh-Fen Juan(阮雪芬) and Hsuan-Cheng Huang(黃宣誠),"Predicting essential genes based on network and sequence analysis",The Royal Society of Chemistry 2009 Molecular BioSystems, 2009, 5, 1672–1678
楊子杰 Sept. 14
S.C. Chiam  (Swee Chiang Chiam), K.C. Tan (Kay Chen Tan, 陳家進) , A. Al Mamum,"Investigating technical trading strategy via an multi-objective evolutionary platform",Expert Systems with Applications, Vol. 36 (2009), pp. 10408-10423
陳紘昕 Sept. 21
Sitao Wu(吳熙濤) and Yang Zhang(張揚),"A comprehensive assessment of sequence-based and template-based methods for protein contact predi",BIOINFORMATICS, Vol. 24, pp. 924–931, 2008
林東建 Sept. 21
LIN ZHU, JIE YANG, JIANG-NING SONG, KUO-CHEN CHOU, HONG-BIN SHEN,"Improving the Accuracy of Predicting Disulfide Connectivity by Feature Selection",J Comput Chem 31: 1478–1485, 2010
王重傑 Sept. 21
Chang Kook Oh, James L. Beck, and Masumi Yamada,"Bayesian Learning Using Automatic Relevance Determination Prior with an Application to Earthquake Early Warning",JOURNAL OF ENGINEERING MECHANICS, DECEMBER 2008, pp. 1113-1020
何秋誼 Sept. 27
Guy Nimrod, Maya Schushan, Andras Szilagyi, Christina Leslie and Nir Ben-Tal,"iDBPs: a web server for the identification of DNA binding proteins",BIOINFORMATICS, Vol. 26 no. 5 2010, pages 692–693
陳愷瑜 Sept. 27
Hon Nian Chua, Kar Leong Tew, Xiao-Li Li(李晓黎), See-Kiong Ng,"A Unified Scoring Scheme for Detecting Essential Proteins in Protein Interaction Networks",Proceedings of the 2008 20th IEEE International Conference on Tools with Artificial Intelligence, 2008, 5, 66-73
楊子杰 Oct. 5
Tiffany Hui-Kuang Yu(游慧光) , Kun-Huang Huarng(黃焜煌),"A neural network-based fuzzy time series model to improve forecasting",Expert Systems with Applications 37 (2010) 3366–3372
周孝岷 Oct. 5
Patrik Bjorkholm, Pawel Daniluk, Andriy Kryshtafovych, Krzysztof Fidelis, Robin Andersson and Torgeir R. Hvidsten,"Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts",BIOINFORMATICS, Vol. 25, pp. 1264–1270, 2009
林東建 Oct. 12
L. Salmela, J. Tarhio and P. Kalsi,"Approximate Boyer-Moore String Matching for Small Alphabets",Algorithmica, Vol. 58, pp. 591–609, 2010
曾球庭 Oct. 12
Hsuan-Hung Lin(林宣宏) and Lin-Yu Tseng(曾怜玉),"DBCP: a web server for disulfide bonding connectivity pattern prediction without the prior knowledge of the bonding state of cysteines",Nucleic Acids Research, 2010, Vol. 38, Web Server issue W503–W507
王重傑 Oct. 18
Chih-Fong Tsai (蔡志豐), Yu-Chieh Hsiao (蕭鈺潔),"Combining multiple feature selection methods for stock prediction: Union, intersection, and multi-intersection approaches",Decision Support Systems, In Press, Available on line August 17, 2010
陳紘昕 Oct. 26
Richard Groult, Elise Prieur , Gwenael Richomme ,"Counting distinct palindromes in a word in linear time",Information Processing Letters, Vol. 110, pp. 908–912, 2010
鄭凱原 Oct. 26
DOMINIK GRONT, SEBASTIAN KMIECIK, ANDRZEJ KOLINSKI,"Backbone Building from Quadrilaterals: A Fast and Accurate Algorithm for Protein Backbone Reconstruction from Alpha Carbon Coordinates",J. Comput. Chem. 28 (2007), pp. 1593–1597
陳愷瑜 Nov. 9
Marcio L Acencio and Ney Lemke,"Towards the prediction of essential genes by integration of,network topology, cellular localization and biological process information",BMC Bioinformatics, September 2009
楊子杰 Nov. 9
Amr Elmasry,"The longest almost-increasing subsequence",Information Processing Letters, Vol. 110, pp. 655-658, 2010
陳泓宇 Nov. 9
Michael Tipping,"Sparse Bayesian Learning and the Relevance Vector Machine",Journal of Machine Learning Research, No. 1, 2001, pp.211-244
何秋誼 Nov. 16
Sebastian Deorowicz,"On Some Variants of the Longest Increasing Subsequence Problem",Theoretical and Applied Informatics, Vol. 21, No. 3-4, pp. 135–148, 2009
曾球庭 Nov. 30
呂 永和(Yungho Leu), 李建邦(Chien-Pang Lee), and Chen-Chia Hung,"A Fuzzy Time Series-Based Neural Network Approach to Option Price Forecasting "Lecture Notes in Computer Science, 2010, Volume 5990/2010,360-369
周孝岷 Nov. 30
Jean-Christophe Gelly, Alexandre G. de Brevern, and Serge Hazout,"‘Protein Peeling’: an approach for splitting a 3D protein structure into compact fragments",BIOINFORMATICS, Vol. 22, pp. 129–133, 2006
林東建 Dec. 8
Qiwen Dong, Shuigeng Zhou, and Jihong Guan,"A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation",BIOINFORMATICS ORIGINAL PAPER Vol. 25 no. 20 2009
王重傑 Dec. 14
Haihui Zhang,"On 3-choosablility of planar graphs with neither adjacent triangles nor 5-,6- and 9-cycles",Information Processing Letters 110(2010) 1084-1087
黃章豪 Dec. 14
Huzefa Rangwala and George Karypis,"Profile-based direct kernels for remote homology detection and fold recognition",BIOINFORMATICS, Vol. 21, No. 23, 2005, pages 4239–4247
何秋誼 Dec. 22
Min Li, Jianxin Wang, Huan Wang, and Yi Pan,"Essential Proteins Discovery from Weighted Protein Interaction Networks",BIOINFORMATICS RESEARCH AND APPLICATIONS Lecture Notes in Computer Science , 2010, pages 89-100
楊子杰 Dec. 28


1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018