Bioinformatics and Computation

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2018年

Presentation file introducer date paper video
Johra Muhammad Moosa, M. Sohel Rahman, Fatema Tuz Zohora. "Computing a longest common subsequence that is almost increasing on sequences having no repeated elements". Journal of Discrete Algorithms 20 (2013) 12–20 陳冠智 Jan. 02
Yi-Cheng Liu(劉一成), I-Cheng Yeh(葉怡成). "Using mixture design and neural networks to build stock selection decision support systems". Neural Computing and Applications, March 2017, Volume 28, Issue 3, pp. 521–535 留嘉鴻 Jan. 02
Jörg P. Bachmann and Johann-Christoph Freytag. "Dynamic Time Warping and the (Windowed) Dog-Keeper Distance". International Conference on Similarity Search and Applications, 4-6 October, 2017, Munich, Germany, Pages 127-140 劉珊如 Jan. 02
Muhammad Rashed Alam, M. Sohel Rahman. "The substring inclusion constraint longest common subsequence problem can be solved in quadratic time". Journal of Discrete Algorithms,Volume 17 (2012), Pages 67–73 梁庭瑋 Jan. 09
Shrikant Kashyap, Mong Li Lee, Wynne Hsu. "Similar Subsequence Search in Time Series Databases".  Proceedings of the 22 International Conference on Database and Expert Systems Applications, Toulouse, France, pp. 232-246, 2011 洪修傑 Jan. 09
Xianbiao Qi, Rong Xiao, Jun Guo, and Lei Zhang. "Pairwise Rotation Invariant Co-occurrence Local Binary Pattern". IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 36, pp. 2199-2213, 2014 傅威皓 Jan. 09
Wei Fu, Wing-Kai Hon, and Wing-Kin Sung. "On All-Substrings Alignment Problems". Computing and Combinatorics, 9th Annual International Conference, COCOON 2003, Big Sky, USA, July, 2003. 李協彥 Jan. 16
Bilel BenAli, Youssef Masmoudi, Souhail Dhouib. "DTW-Global Constraint Learning Using Tabu Search Algorithm". Procedia Computer Science, Volume 82, 2016, pp. 12-19 陳柏憲 Jan. 16
Zhengyao Jiang, Dixing Xu, Jinjun Liang. "A Deep Reinforcement Learning Framework for the Financial Portfolio Management Problem". arxiv.org 留嘉鴻 Jan. 23
Daniel R. Zerbino and Ewan Birney. "Velvet: Algorithms for de novo short read assembly using de Bruijn graphs". Cold Spring Harbor Laboratory Press on March 18, 2008, Volume 18,pp 821-829 吳承翰 Jan. 23
Jared T. Simpson and Richard Durbin. "Efficient construction of an assembly string graph using the FM-index". Bioinformatics, 2010 ,pp 367–373. 黃國峰 Jan. 23
Jared T. Simpson and Richard Durbin. "Efficient de novo assembly of large genomes using compressed data structures elements". Genome Research 22:549–556 陳冠智 Jan. 30
Yao-Ting Huang* and Chen-Fu Liao. "Integration of string and de Bruijn graphs for genome assembly". Department of Computer Science and Information Engineering, National Chung Cheng University, Chiayi, Taiwan 梁庭瑋 Jan. 30
Jared T. Simpson and Richard Durbin. "Efficient de novo assembly of large genomes using compressed data structures elements". Genome Research 22:549–556 陳冠智 Feb. 06
Heng Li. "Fast construction of FM-index for long sequence reads". Oxford Journal, Bioinformatics Vol. 30, No. 22, 15 Nov, 2014, Pages 3274-3275 劉珊如 Feb. 06
Dipendra Gurung, Udit Kr. Chakraborty and Pratikshya Sharma. "Intelligent Predictive String Search Algorithm". Procedia Computer Science, vol. 79, pp. 161-169, 2016 洪修傑 Feb. 13
Toan Thang Ta, Cheng-Yao Lin, and Chin Lung Lu. "An Efficient Algorithm for Computing Non-overlapping Inversion and Transposition Distance". Information Processing Letters, Vol. 116, No. 12, pp. 744-749, July, 2016. 李協彥 Feb. 13
Lei Lei. "Wavelet Neural Network Prediction Method of Stock Price Trend Based on Rough Set Attribute Reduction". School of Business Administration, Henan University of Economics and Law, Zhengzhou, Henan 450046, China Applied Soft Computing, Volume 62, January 2018, Pages 923-932. 吳承翰 Feb. 13
Mauro Castelli, Riccardo Dondi, Giancarlo Mauri, and Italo Zoppis. "The Longest Filled Common Subsequence Problem". 28th Annual Symposium on Combinatorial Pattern Matching, pp. 14:1–14:13, July, 2017, Warsaw, Poland. 黃國峰 Feb. 27
Amr Elmasry. "The longest almost-increasing subsequence". Information Processing Letters 110 (2010) 655–658 羅守莆 Feb. 27
Yanqing Ye, Caiyun Niu, Jiang Jiang, Bingfeng Ge and Kewei Yang. "A Shape Based Similarity Measure for Time Series Classification with Weighted Dynamic Time Warping Algorithm". Information Science and Control Engineering (ICISCE), Changsha China, 2017 4th International Conference. 陳柏憲 Mar. 06
Ian J. Goodfellow, Jean Pouget-Abadie, Mehdi Mirza, Bing Xu, David Warde-Farley, Sherjil Ozair, Aaron Courville and Yoshua Bengio. "Generative Adversarial Nets ". The Conference on Neural Information Processing Systems Montréal, Canada, 2014. 留嘉鴻 Mar. 06
Seema Rani and Dharmveer Singh Rajpoot. "Improvised divide and conquer approach for the LIS problem". Journal of Discrete Algorithms 48 (2018) 17–26. 陳冠智 Mar. 06
Minwoo Lee,  Sanghun Lee,  Mi-Jung Choi, Yang-Sae Moon and Hyo-Sang Lim. "HybridFTW: Hybrid Computation of Dynamic Time Warping Distances". IEEE Access Vol. 6, 08 Dec, 2017, Pages 2085-2096. 劉珊如 Mar. 13
Sang Won Bae and Inbok Lee. "On finding a longest common palindromic subsequence". Theoretical Computer Science Volume 710, 1 February 2018, Pages 29-34. 梁庭瑋 Mar. 13
Amin Hedayati Moghaddama, Moein Hedayati Moghaddamb and Morteza Esfandyaric. "Stock market index prediction using artificial neural network". Journal of Economics, Finance and Administrative Science Volume 21, Issue 41, December 2016, Pages 89-93. 吳承翰 Mar. 21
Guy Jacobson and Kiem-Phong Vo. "Heaviest Increasing/Common Subsequence Problems". Combinatorial Pattern Matching: Third Annual Symposium Tucson, Arizona, USA, April 29–May 1, 1992 Proceedings pp 52-66. 黃國峰 Apr. 03
Sung-Ryul Kim and Kunsoo Park. "A dynamic edit distance table". Journal of Discrete Algorithms, vol. 2, pp. 303-312, 2004. 洪修傑 Apr. 03
Richard Groult, Élise Prieur and Gwénaël Richomme. "Counting distinct palindromes in a word in linear time". Information Processing Letters Volume 110, 2010, Pages 908-912. 梁庭瑋 Apr. 03
Masashi Kiyomi, Hirotaka Ono, Yota Otachi, Pascal Schweitzer, and Jun Tarui. "Space-Efficient Algorithms for Longest Increasing Subsequence". arXiv:1712.09230v1, 2017. 陳冠智 Apr. 10
Yao Qin, Dong Song, Haifeng Chen, Wei Cheng, Guofei Jiang and Garrison W. Cottrell. "A Dual-Stage Attention-Based Recurrent Neural Network". https://arxiv.org/abs/1704.02971. 留嘉鴻 Apr. 10
Anooshiravan Sharabiani, Houshang Darabi, Ashkan Rezaei, Samuel Harford, Hereford Johnson and Fazle Karim. "Efficient Classification of Long Time Series by 3-D Dynamic Time Warping". IEEE Transactions on Systems, Man, and Cybernetics: Systems Vol. 47, Oct, 2017, Pages 2688-2703. 劉珊如 Apr. 10
Masashi Kiyomi, Hirotaka Ono, Yota Otachi, Pascal Schweitzer, and Jun Tarui. "Space-Efficient Algorithms for Longest Increasing Subsequence". arXiv:1712.09230v1, 2017. 陳冠智 Apr. 17
M. Kubica, T. Kulczyński, J. Radoszewski, W. Rytter, and T. Waleń. "A Linear Time Algorithm for Consecutive Permutation Pattern Matching". Information Processing Letters, Vol. 113, No. 12, pp. 430-433, June 2013. 李協彥 Apr. 17
M. Łuczak. "Univariate and Multivariate Time Series Classification with Parametric Integral Dynamic Time Warping". Journal of Intelligent & Fuzzy Systems, vol. 33, no. 4, pp. 2403-2413, 2017. 陳柏憲 Apr. 24
Maxime Crochemore and Ely Porat. "Computing a Longest Increasing Subsequence of Length k in Time O(nloglogk)". Proceeding VoCS'08 Proceedings of the 2008 international conference on Visions of Computer Science: BCS International Academic Conference Pages 69-74, London, UK , September 22 - 24, 2008. 黃國峰 Apr. 24
Heikki Hyyrö, Kazuyuki Narisawa and Shunsuke Inenaga. "Dynamic edit distance table under a general weighted cost function". Heikki Hyyrö, Kazuyuki Narisawa and Shunsuke Inenaga Journal of Discrete Algorithms, vol. 34, pp. 2-17, 2015. 洪修傑 Apr. 24
Levon Aslanyan. "LCS algorithm with vector-markers". Proceedings of Computer Science and Information Technologies (CSIT) 25-29 Sept. 2017, Yerevan, Armenia. 梁庭瑋 May. 01
Xiaozhou He and Yinfeng Xu. "The longest commonly positioned increasing subsequences problem". Journal of Combinatorial Optimization February 2018, Volume 35, Issue 2, pp 331–340. 羅守莆 May. 01
Saud Almahdi and Steve Y. Yang. "An adaptive portfolio trading system: A risk-return portfolio optimization using recurrent reinforcement learning with expected maximum drawdown". Financial Engineering Program, School of Business, Stevens Institute of Technology, 1 Castle Point on Hudson, Hoboken, NJ 07030, USA. 吳承翰 May. 01
Isaac Goldstein and Moshe Lewenstein. "Quick greedy computation for minimum common string partition". Theoretical Computer Science 542 (2014) 98–107. 陳冠智 May. 08
Yuan Wan, Xiao-Li Chen and Ying Shi. "Adaptive cost dynamic time warping distance in time series analysis for classification". Journal of Computational and Applied Mathematics Volume 319, 1 August 2017, Pages 514-520. 劉珊如 May. 08
Chuan Xiao, Wei Wang and Xuemin Lin. "Ed-Join: An Efficient Algorithm for Similarity Joins With Edit Distance Constraints". Proceedings of the VLDB Endowment, vol. 1, pp. 933-944, Auckland, New Zealand, August, 2008. 洪修傑 May. 15
Enno Ohlebusch and Simon Gog. "Efficient Algorithms for the All-pairs Suffix-Prefix Problem and the All-pairs Substring-prefix Problem". Information Processing Letters, Vol. 110, No. 3, pp. 123-128, January 2010. 李協彥 May. 15
Manoj Thakur and Deepak Kumar. "A hybrid financial trading support system using multi-category classifiers and random forest". Indian Institute of Technology-Mandi, Mandi 175001, Himachal Pradesh, India, Applied Soft Computing 67 (2018) 337–349. 吳承翰 May. 23
Cees Elzinga , Sven Rahmann and Hui Wang. "Algorithms for Subsequence Combinatorics". Theoretical Computer Science 409 (2008) , 394–404. 梁庭瑋 May. 23
Daxin Zhu, Lei Wang, Tinran Wang, and Xiaodong Wang. "A simple linear space algorithm for computing a longest common increasing subsequence". https://arxiv.org/abs/1608.07002v1, Thu, 25 Aug 2016. 黃國峰 May. 23
Jiamei Liu and Suping Wu. "Research on Longest Common Subsequence Fast Algorithm". International Conference on Consumer Electronics, Communications and Networks(CECNet), IEEE, Xianning, China, March, 2011. 陳冠智 May. 30
Lin Feng, Xiaoyan Zhao, Yiwei Liu, Yuan Yao and Bo Jin. "A Similarity Measure of Jumping Dynamic Time Warping". 2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery (FSKD 2010), Yantai, China. 劉珊如 May. 30
Yoshifumi Sakai. "Maximal Common Subsequence Algorithms". 29th Annual Symposium on Combinatorial Pattern Matching (CPM 2018) Article No. 1; pp. 1:1–1:10. 黃國峰 Jun. 05
Leonel A.Laboissiere, Ricardo A.S.Fernandes and Guilherme G.Lage. "Maximum and minimum stock price forecasting of Brazilian power distribution companies based on artificial neural networks". Applied Soft Computing, Volume 35, October 2015, Pages 66-74. 吳承翰 Jun. 05
Ali Alatabbi, Costas S. Iliopoulos and M. Sohel Rahman. "Maximal Palindromic Factorization". Proceedings of the Prague Stringology Conference (2012), August 27–28. 梁庭瑋 Jun. 19
Mohamed Abdelaal, Peter Nazier Mosaad and Oliver Theel. "liteDTW: A lightweight dynamic time warping for tiny wireless sensing devices". 2015 IEEE Conference on Wireless Sensors (ICWiSe) 24-26 Aug. 2015, Melaka, Malaysia. 劉珊如 Jun. 19
Rajesh Prasad and Rama Garg. "Efficient Multi-word Parameterized Matching on Compressed Text". IEEE 6th International Conference on Adaptive Science & Technology (ICAST), Lagos, Nigeria, Oct 29~ Oct 31, 2014. 陳冠智 Jun. 26
Omer Berat Sezer and Ahmet Murat Ozbayoglu. "Algorithmic financial trading with deep convolutional neural networks: Time series to image conversion approach". Applied Soft Computing, Volume 70, September 2018, Pages 525-538. 吳承翰 Jun. 26
Hesam Izakian, Witold Pedrycz, and Iqbal Jamal. "Fuzzy clustering of time series data using dynamic time warping distance". Engineering Applications of Artificial Intelligence Vol. 39, 2015, Pages 235-244. 劉珊如 Jul. 03
Amit Kumar Dutta, Masud Hasan, and M. Sohel Rahman. "Prefix transpositions on binary and ternary strings". Information Processing Letters, 113 (2013) p.265–270. 陳冠智 Jul. 10
Daxin Zhu and Xiaodong Wang. "A fast algorithm for solving a generalized longest common subsequence problem". International Computer Sciences and Informatics Conference (ICSIC), Amman, January 12-13, 2016, pp 1-7. 黃國峰 Jul. 10
Md. Mahbubul Hasan, A. S. M. Sohidull Islam, M. Sohel Rahman, and Ayon Sen. "Palindromic Subsequence Automata and Longest Common Palindromic Subsequence". Mathematics in Computer Science (2017), Volume 11, Issue 2, pp 219-232. 梁庭瑋 Jul. 17
Pei-Chann Chang, Chen-Hao Liu, Jun-Lin Lin, Chin-Yuan Fan, and Celeste S.P. Ng. "A neural network with a case based dynamic window for stock trading prediction". Expert Systems with Applications, Volume 36, Issue 3, Part 2, April 2009, Pages 6889-6898. 吳承翰 Jul. 17
Daxin Zhu, Lei Wang, Tinran Wang, and Xiaodong Wang. "A space efficient algorithm for the longest common subsequence in k-length substrings". Theoretical Computer Science Volume 687, 29 July 2017, Pages 79-92. 黃國峰 Jul. 24
Max Spooner, David Kold, and Murat Kulahci. "Selecting local constraint for alignment of batch process data with dynamic time warping". Chemometrics and Intelligent Laboratory Systems Vol. 167, 2017, Pages 161-170. 劉珊如 Jul. 24
Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias and Zanoni Dias. "Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem". 5th International Conference on Algorithms for Computational Biology (AlCoB), Hong Kong, China, June 25 ~ June 26, 2018. 陳冠智 Jul. 31
Abdullah Mueen, Nikan Chavoshi, Noor Abu-El-Rub, Hossein Hamooni, Amanda Minnich. "AWarp: Fast Warping Distance for Sparse Time Series". 2016 IEEE 16th International Conference on Data Mining (ICDM) 12-15 Dec. 2016, Barcelona, Spain. 劉珊如 Sep. 11
Jou-Fan Chen, Wei-Lun Chen, Chun-Ping Huang, Szu-Hao Huang, and An-Pin Chen. "Financial Time-series Data Analysis using Deep Convolutional Neural Networks". 7th International Conference on Cloud Computing and Big Data, Macau, China,16-18 Nov. 2016. 吳承翰 Sep. 11
M.Priya, Dr.R.Kalpana and T.Srisupriya. "Hybrid Optimization Algorithm Using N-Gram Based Edit Distance". International Conference on Communication and Signal Processing, April 6 - April 8, 2017, Chennai, India. 陳冠智 Sep. 18
Christian Blum, Maria J. Blesa. "Hybrid techniques based on solving reduced problem instances for a longest common subsequence problem". Applied Soft Computing 62 (2018) pp. 15–28. 黃國峰 Sep. 18
Adrian Kosowski. "An Efficient Algorithm for the Longest Tandem Scattered Subsequence Problem". Proceeding of String Processing and Information Retrieval: 11th International Conference, SPIRE 2004, Padova, Italy, October 5-8, 2004. 梁庭瑋 Sep. 18
Md. Mahbubul Hasan, A.S.M. Shohidull Islam Mohammad Saifur Rahman, M. Sohel Rahman. "Order preserving pattern matching revisited". Pattern Recognition Letters 55 (2015) 15–21. 賴冠霖 Sep. 26
Ju Young Kang , Byung Suk Lee. "Optimisation of pipeline route in the presence of obstacles based on a least cost path algorithm and laplacian smoothing". International Journal of Naval Architecture and Ocean Engineering 9 (2017) 492-498. 蔡豐仰 Sep. 26
Bilel Ben Ali, Youssef Masmoudi, and Souhail Dhouib. "Accurate and Fast Dynamic Time Warping Approximation Using Upper Bounds". Proceedings of 38th International Conference on Telecommunications and Signal Processing (TSP), 2015, Pages 1 – 6, Prague, Czech. 呂政彥 Oct. 03
S. V. Znamenskij. "A model and algorithm for sequence alignment". Program System: Theory And Applications 2015 189-197. 吳篤承 Oct. 03
Shingo Mabu, Masanao Obayashi, and Takashi Kuremoto. "Ensemble learning of rule-based evolutionary algorithm using multi-layer perceptron for supporting decisions in stock trading problems". Applied Soft Computing 36 (2015) 357–367. 吳承翰 Oct. 03
Dina Sokol and Justin Tojeira. "Speeding up the detection of tandem repeats over the edit distance". Theoretical Computer Science 525 (2014) 103–110. 陳冠智 Oct. 09
Hong Yin, Shuqiang Yang, Shaodong Ma, Fei Liu, and Zhikun Chen. "A Novel Parallel Scheme for Fast Similarity Search in Large Time Series". China Communications Vol. 12, Feb, 2015, Pages 129-140. 劉珊如 Oct. 09
Houman Kamran, Kang Zhang, Maoqing Li, and Xin Li. "An LCS-based 2D Fragmented Image Reassembly Algorithm". Proceedings of  13th International Conference onComputer Science & Education (ICCSE 2018), August 8-11, 2018. Colombo, Sri Lanka. 黃國峰 Oct. 16
Zheng Liu, Xin Chen, James Borneman, and Tao Jiang. "A Fast Algorithm for Approximate String Matching on Gene Sequences". Proceedings of 16th Annual Symposium on Combinatorial Pattern Matching(CPM) June 19-22, 2005, Jeju Island, Korea. 賴冠霖 Oct. 16
Takafumi Inoue, Shunsuke Inenaga, Heikki Hyyrö, Hideo Bannai, and Masayuki Takeda. "Computing longest common square subsequences". Proceedings of 29th Annual Symposium on Combinatorial Pattern Matching, CPM 2018, Qingdao, China. 梁庭瑋 Oct. 16
André Weißenberger, Bertil Schmidta. "Massively Parallel Huffman Decoding on GPUs". 47th International Conference on Parallel Processing, August 13–16, 2018, University of Oregon Eugene, OR, USA. 蔡豐仰 Oct. 23
Pei-Chann Chang, T. Warren Liao, Jyun-Jie Lin, and Chin-Yuan Fan. "A dynamic threshold decision system for stock trading signal detection". Applied Soft Computing 11 (2011) 3998–4010. 吳承翰 Oct. 23
Duarte Folgado , Marília Barandas, Ricardo Matias, Rodrigo Martins, Miguel Carvalho, and Hugo Gamboa. "Time Alignment Measurement for Time Series".Pattern Recognition 81 (2018) 268–279. 朱可欣 Oct. 23
Diego F. Silva and Gustavo E. A. P. A. Batista. "Speeding Up All-Pairwise Dynamic Time Warping Matrix Calculation". Proceedings of the 2016 SIAM International Conference on Data Mining May 5-7, 2016, Miami, Florida, USA. 劉珊如 Oct. 30
Phongsakorn Sathianwiriyakhun, Thapanan Janyalikit, and Chotirat Ann Ratanamahatana. "Fast and Accurate Template Averaging for Time Series Classification". Proceedings of 8th International Conference on Knowledge and Smart Technology (KST), 2016, Pages 49 – 54, Chiangmai, Thailand. 呂政彥 Oct. 30
Yucan Zhou, Qinghua Hu, and Yu Wang. "Deep super-class learning for long-tail distributed image classification". Pattern Recognition 80 (2018) 118-128. 吳篤承 Oct. 30
M. A. Babenko and T. A. Starikovskaya. "Computing the Longest Common Substring with One Mismatch". Problems of Information Transmission 47 (2011) 28–33. 陳冠智 Nov. 06
Filip Pavetic, Ivan Katanic, Gustav Matula, Goran Zuzic, and Mile Sikic. "Fast and Simple Algorithms for Computing both LCSk and LCSk+". Proceedings of the Prague Stringology Conference 50-62 August 27–28, 2018, Czech Technical University, Prague. 賴冠霖 Nov. 06
         

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018