Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018

2004年

Presentation file introducer date
Introduction of KChIPs(聯合meeting) 陳建儐 Jan. 9
Arc-Segment Alignment for RNA Secondary Structure(聯合meeting) 彭永興 Jan. 9
Y.A Kuryshev, B. A. Wible, T. I. Gudz, A. N. Ramirez, and A. M. Brown, "KChAP/Kvβ1.2 Interactions and Their Effects on Cardiac Kv Channel Expression", Am J Physiol Cell Physiol 281, pp. 290-299, 2001 曾球庭 Jan. 16
David Loewenstern, Haym Hirsh, Peter Yianilos and Michiel Noordewier, "DNA Sequence Classification Using Compression-Based Induction", DIMACS* Technical Report 95-04 April 1995 孫嘉璘 Jan. 28
Vineet Bafna, Bjarni V. Halldorsson, Russell Schwaartz, Andrew G. Clark and Sorin Istrail, "Haplotypes and Informative SNP Selection Algorithms: Don’t Block Out Information", RECOMB ’03 (The Seventh Annual International Conference on Research in Computational Molecular Biology), pp. 19-27 孫嘉璘 Feb. 18
HSIEN-DA HUANG, HUEI-LINA and TSUNG-SHAN TSOU, "A Data Mining Method to Predict Transcriptional Regulatory Sites Based On Differentially Expressed Genes in Human Genome", JOURNAL OF INFORMATION SCIENCE AND ENGINEERING 19,923-942(2003) 楊慧敏 Feb. 18
Ji Youn Lee, Soo-Yong Shin, Sirk June Augh, Tai Hyun Park, Byoung-Tak Zhang, "emperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges",  Preliminary Proceedings of the Eighth International Meeting on DNA Based Computers (DNA8), pp. 41-50, 2002. 黃宏偉 Feb. 18
F. R. Hsu and J. F. Chen, "Aligning ESTs to Genome Using Multi-Layer Unique Makers", IEEE Computer Society Bioinformatics Conference, pp. 564-566, 2003 王嘉章 Feb. 25
Zhengyan Kan, David states, and Warren Gish, "Selecting for Functional Alternative Splices in ESTs", Genome Research ,Vol. 12, Issue 12, 1837-1845, December 2002 楊慧敏 Mar. 12
Zheng Zhang, Piotr Berman and Webb Miller, "Alignments without Low-Scoring Regions", RECOMB ’98 (Annual International Conference on Research in Computational Molecular Biology), pp. 294-301, 1998 魏良泰 Mar. 19
Gary Benson, "An Algorithm for Finding Tandem Repeats of Unspecified Pattern Size", Nucleic Acids Research, Vol. 27, No. 2, pp. 573-580, 1999 劉振順 Mar. 19
Junghuei Chen, Eugene Antipov, Bertrand Lemieux, Walter Cedeno, 
David Harlen Wood, "In vitro Selection for a Max 1s DNA Genetic Algorithm", DIMACS series in discrete mathematics and theoretical computer science, pp. 23-37, 1999
黃宏偉 Mar. 25
Rotem Sorek, Gil Ast, and Dan Graur, "Alu-Containing Exons are Alternatively Spliced", Genome Research, pp. 1060-1067, 2002 王嘉章 Mar. 25
Sean R Eddy, "A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure", BMC Bioinformatics, 3-18, 2002 彭永興 Mar. 25
"Identification of Regulatory Binding Sites Using Minimum Spanning Trees, "Pacific Symposium on Biocomputing, pp. 327-338, 2003(聯合meeting) 曾球庭 Apr. 02
Kensaku Sakamoto, Hidetaka Gouzu, Ken Komiya, Daisuke Kiga, Shigeyuki Yokoyama, Takashi Yokomori, Masami Hagiya, "Molecular Computation by DNA Hairpin Formation", Science, Vol. 288, pp. 1223-1226, 2000 劉振順 Apr. 22
Rotem Sorek and Hershel M. Safer, "A Novel Algorithm for Computational Identification of Contaminated EST Libraries Rotem Sorek and Hershel M. Safer", Nucleic Acids Research, Vol. 31, No. 3, pp. 1067-1074, 2003 王嘉章 Apr. 22
Julie D.Thompson, Desmond G.Higgins and Toby J.Gibson, "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic Acids Research, 1994, Vol. 22, No. 22, pp. 4673-4680 魏良泰 Apr. 30
Gopal Pandurangan and H. Ramesh, "The restriction mapping problem revisited", Journal of Computer and System Sciences 526~544(2002) 董建甫 Apr. 30
Matthias Scherf, Andreas Klingenhoff and Thomas Werner, "Highly Specific Localization of Promoter Regions in Large Genomic Sequences by PromoterInspector: A Novel Context Analysis Approac", Journal of Molecular Biology, 31 March 2000, Volume 297,Issue 3,Pages 599-606 楊慧敏 May 14
V. Freschi, and A. Bogliolo, "Longest Common Subsequence between Run-length-encoded Strings: A New Algorithm with Improved Parallelism", Information Processing Letters, Vol. 90, pp. 167-173, 2004. 曾球庭 May 14
Andreas Wagner, How to reconstruct a large genetic network from n gene perturbations in fewer than n^2 easy steps, Bioinformatics Vol. 17, no. 12, pp. 1183-1197, 2001 林旭紳 May 14
Burkhard Rost, Reinhard Schneider and Chris Sander, "Protein Fold Recognition by Prediction-based Threading", Molecular Biology, Vol. 270, pp. 471-480, 1997 王嘉章 May 28
Richa Agarwala, Serafim Batzoglou, Vlado Dancik, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, and Steven Skiena, "Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in HP Model", Journal of Computational Biology, Vol. 4, pp. 275-296, 1997 王嘉章 Jun. 18
Haim Kaplan, Ron Shamir and Robert E. Tarjan, "A Faster and Simpler Algorithm for Sorting Signed Permutation by Reversals", SIAM Journal on Computing, Vol. 29, No. 3, 2000, pp. 880-892. 魏良泰 Jun. 30
Vincent A. Fischetti, Gad M. Landau Peter H. Sellers, and Jeanette P. Schmidt, "Identifying Periodic Occurrences of a Template with Applications to Protein Structure", Information Processing Letters, Vol. 45, pp. 11-18, 1993. 林旭紳 Jun. 30
Miguel L. Teodoro, George N. Phillips Jr and Lydia E. Kavraki, "A Dimensionality Reduction Approach to Modeling Protein Flexibility", In Proceeding The Sixth Annual International Conference on Research in Computational Molecular Biology RECOMB 2002 王嘉章 Ju1. 23
Remeo Rizzi, Vineet Bafna, Sorin Istrail, and Giuseppe Lancia, "Practical Algorithms and Fixed Parameter Tractability for the Single Individual SNP Haplotyping Problem", 2nd Workshop on Algorithms in Bioinformatics (WABI), Lecture Notes in Computer Science, 2452:29-43, 2002 魏良泰 Ju1. 23
I.Ahmad, M.K.Dhodhi and R.UI-Mustafa, "DPS: Dynamic priority scheduling heuristic for heterogeneous computing systems", IEE Proceedings online1998 董建甫 Ju1. 30
Andrzej Lingas,Hans Olsson , and Anna Ostlin, "Efficient Merging and Construction of Evolutionary Trees", Journal of Algorithms 2001 董建甫 Aug. 20
Jong Park, Sabine Dietmann, Andreas Heger and Liisa Holm, "Estimating the Significance of Sequence Order in Protein Secondary Structure and Prediction", BIOINFORMATICS, Vol. 16, No. 11, pp 978-987, 2000  (聯合meeting) 王嘉章 Aug. 27
Introduction to Gene Finding  (聯合meeting) 魏良泰 Aug. 27
Wolfgang Kabsch and Christian Sander, "Dictionary of Protein Secondary Structure Pattern Recognition of Hydrogen-Bonded and Geometrical Feature", Biopolymers,Vol. 22, pp2577-2637, 1983 王嘉章 Sep. 03
Abdullah N. Arslan, Omer E gecio glu and Pavel A. Pevzner, "A New Approach to Sequence Comparison: Normalized Sequence Alignment", Bioinformatics, Vol.17, No.4, pp. 327-227, 2001 魏良泰 Sep. 03
Andrew E. Firth, Chris M. Brown, "Detecting Overlapping Coding Sequences with Pairwise Alignments", Bioinformatics Advance Access published on September 3, 2004. 曾球庭 Sep. 10
Esko Ukkonen, "On-line Construction of Suffix Tree", Algorithmica Vol. 14, No. 3, pp. 249-260,  1995 林旭紳 Sep. 10
Tetsuo Shibuya, "Generalization of a Suffix Tree for RNA Structural Pattern Matching", Algorithmica (2004), vol. 39, pp. 1-19 彭永興 Sep. 17
Genome Rearrangements (聯合meeting) 曾球庭 Sep. 24
David Bryant and Mike Steel, "Constructing Optimal Trees from Quartets", Journal of Algorithms, Vol. 38, pp. 237-259, 2001 安興彥 Sep. 30
Edward S.C. Shih and Ming-Jing Hwang, "Alternative Alignments from Comparison of Protein Structures", PROTEINS:Structure,Function, and Bioinformatics, Vol. 56, pp 519-527,2004 王嘉章 Sep. 30
Bin Ma, John Tromp and Ming Li, "PatternHunter: faster and sensitive homology search", Bioinformatics, Vol.18, No.3, pp. 440-445, 2002 魏良泰 Sep. 30
George A. Komatsoulis and Michael S. Waterman, "Chimeric Alignment by Dynamic Programming: Algorithm and Biology Uses", Research in Computational Molecular Biology (RECOMB 97) 陳建儐 Oct. 08
Francis Y.L. Chin, Alfredo De Santis, Anna Lisa Ferrara, N.L. Ho and S.K. Kim, "A Simple Algorithm for the Constrained Sequence Problems", Information Processing Letters, Vol. 90, No. 4, pp. 175-179, Jan. 2004  王嘉章 Oct. 15
Dan Gusfield, "Haplotyping as Perfect Phylogeny: Conceptual framework and Efficient Solutions", RECOMB, pp. 166-175, 2002 魏良泰 Nov. 05
Itsik Pe'er, Tal Pupko, Ron Shamir, and Roded Sharan, "Incomplete Directed Perfect Phylogeny", SIAM Journal on Computing Volume 33, Number 3, pp. 590-6070 林旭紳 Nov. 05
Maria Elena Ochagavia and Shoshana Wodak, "Progressive Combinatorial Algorithm for Multiple Structural Alignments:Application to Distantly Related Proteins", PROTEINS:Structure,Function and Bioinformatics, Vol. 55, pp. 436-454, 2004 (聯合meeting) 王嘉章 Nov. 12
Paola Bonizzoni, Gianluca Della Vedova and Giancarlo Mauri, "Experimenting an approximation algorithm for the LCS", Discrete Applied Mathematics, 110 (2001) ,pp. 13–24 羅裕傑 Nov. 19
Vineet Bafna, Dan Gusfield, Giuseppe Lancia and Shibu Yooseph, "Haplotyping as Perfect Phylogeny: A Direct Approach", Journal of Computational Biology, Vol. 10, No. 3, pp. 323-340, 2003 魏良泰 Nov. 19
Yi Wang and Kuo-Bin Li, "An Adaptive and Iterative Approach for Multiple Sequence Alignment", Computational Biology and Chemistry, vol.28, pp. 141–148, 2004 邢金良 Nov. 26
Giancarlo MAURI,Antonio PICCOLBONI and Giulio PAVESI, "Approximation Algorithms For Protein Folding Prediction", Symposium on Discrete Algorithms, pp. 945-946, 1999 王嘉章 Nov. 26
Amihood Amir, Moshe Lewenstin, Ely Porat, "Faster Algorithm for String Matching with k Mismatches", Journal of Algorithms, Vol. 50, 2004, pp. 257-275 安興彥 Nov. 26
Block Alignment and the Four-Russians Speedup (聯合meeting) 彭永興 Dec. 04
Gary Benson and Lan Dong, "Reconstructing the Duplication History of a Tandem Repeat", Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999 董建甫 Dec. 10
Amihood Amir, Moshe Lewenstin and Ely Porat, "Faster Algorithm for String Matching with k Mismatches (II)", Journal of Algorithms, Vol. 50, 2004, pp. 257-275 安興彥 Dec. 24
S. Lise and D.T. Jones, "Sequence Patterns Associated with Disordered Regions in Proteins", PROTEINS: Structure, Function, and Bioinformatics, Vol. 58, pp. 144-150, 2005 王嘉章 Dec. 24
0Saurabh Sinha, "Discriminative Motifs", RECOMB ’02, April 18-21 楊慧敏 Dec. 30
Seung-Joon Oh and Jae-Yearn Kim, "A Hierarchical Clustering Algorithm for Categorical Sequence Data", Information Processing Letters, vol. 91, pp.135–140, 2004 邢金良 Dec. 30

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018