Bioinformatics and Computation

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2019年

Presentation file introducer date paper video
Felipe A. Louza, Simon Gog, Leandro Zanotto, Guido Araujo, and Guilherme P. Telles, "Parallel Computation for the All-Pairs Suffix-Prefix Problem," 23rd International Symposium, SPIRE 2016, pp. 122-132, Beppu, Japan, October 18-20, 2016. 黃國峰 Jan. 08
Weiyu Si, Jinke Li, Ruonan Rao, and Peng Ding, "A Multi-Objective Deep Reinforcement Learning Approach for Stock Index Futures’s Intraday Trading," 2017 10th International Symposium on Computational Intelligence and Design, Hangzhou, China, Pages 431–436. 蔡豐仰 Jan. 08
Norberto Ritzmann Júnior and Julio Cesar Nievola, "A generalized financial time series forecasting model based on automatic feature engineering using genetic algorithms and support vector machine," arXiv:1809.06775, 18 Sept, 2018. 吳承翰 Jan. 08
Shivika Gupta, Rajesh Prasad, and Sunita Yadav, "Searching Gapped Palindromes Using Inverted Suffix Array," 2015 IEEE International Conference on Computational Intelligence & Communication Technology, Ghaziabad, India, pp. 186-191, 2015. 梁庭瑋 Jan. 15
Yuansheng Lou, Huanhuan Ao, and Yuchao Dong, "Improvement of Dynamic Time Warping (DTW) Algorithm," Proceeding of 14th International Symposium on Distributed Computing and Applications for Business Engineering and Science Guiyang, China, 18-24 Aug. 2015. 劉珊如 Jan. 15
Joachim Dehais, Marios Anthimopoulos, and Stavroula Mougiakakou, "Food Image Segmentation for Dietary Assessment," MADiMa’16, Oct 16 2016, Amsterdam, Netherlands. 吳篤承 Jan. 15
Yewang Chen , Shengyu Tang , Nizar Bouguila , Cheng Wang , Jixiang Du , and HaiLin Li, "A fast clustering algorithm based on pruning unnecessary distance computations in DBSCAN for high-dimensional data," Pattern Recognition 83 (2018) 375–387. 賴冠霖 Jan. 22
Regina Meszlényi, Ladislav Peska, Viktor Gál, Zoltán Vidnyánszky, and Krisztian Buza, "Classification of fMRI data using Dynamic Time Warping based functional connectivity analysis," 2016 24th European Signal Processing Conference (EUSIPCO). 呂政彥 Jan. 22
Stefano Beretta, "Algorithms for Strings and Sequences: Pairwise Alignment," University of Milan – Bicocca, Milan, Italy. 陳冠智 Jan. 29
Joachim Dehais, Marios Anthimopoulos, and Stavroula Mougiakakou, "A Survey on Transfer Learning," IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, VOL. 22, NO. 10, OCTOBER 2010. 朱可欣 Jan. 29
Yin Zhou and Oncel Tuzel, "VoxelNet: End-to-End Learning for Point Cloud Based 3D Object Detection," arXiv:1711.06396v1 [cs.CV] 17 Nov 2017. 陳佳琳 Feb. 12
Tony Beltramelli, "pix2code: Generating Code from a Graphical User Interface Screenshot," In EICS ’18: ACM SIGCHI Symposium onEngineering Interactive Computing Systems, June 19–22, 2018, Paris,France. 蔡豐仰 Feb. 12
XIAODONG WANG and LEI WANG, "A Simple Linear Space Algorithm for Computing Nonoverlapping Inversion and Transposition Distance in Quadratic Average Time," JOURNAL OF COMPUTATIONAL BIOLOGY Volume 25, Number 0, 2018. 黃國峰 Feb. 12
Palindromic Decompositions with Gaps and Errors," Proceedings of 12th International Computer Science Symposium in Russia (CSR) Kazan, Russia, June 8-12, 2017 pp 48-61. 賴冠霖 Feb. 19
CNNpred CNN-based stock market prediction using several data sources, Ehsan Hoseinzade, Saman Haratizadeh arXiv:1810.08923v1, Oct 21, 2018. 吳承翰 Feb. 19
Longest Common Subsequence in at Least k Length Order-Isomorphic Substrings, 43rd International Conference: Theory and Practice of Computer Science Limerick, Ireland, January 16-20, 2017, pp.363-374. 吳篤承 Feb. 19
Longest Property-Preserved Common Factor," Proceedings of International Symposium on String Processing and Information Retrieval,2018, Lima, Peru. 梁庭瑋 Feb. 26
Variable Selection and Model Prediction Based on Lasso, Adaptive Lasso and Elastic Net, 4th International Conference on Computer Science and Network Technology (ICCSNT),2015, Pages 579 - 583, Harbin, China. 呂政彥 Feb. 26
Prediction of Continuous B-cell Epitopes Using Long Short Term Memory Networks, 2018 IEEE 6th International Conference on Bioinformatics and Computational Biology (ICBCB 2018), March 12–14, 2018, Chengdu, China. 蔡豐仰 Feb. 26
On Multiple Longest Common Subsequence and Common Motifs with Gaps (Extended Abstract), Proceedings of the 12th Workshop on Algorithms and Computation (WALCOM 2018), Dhaka, Bangladesh, March 3-5, 2018. 黃國峰 Mar. 5
Segmentation of Time Series in Improving Dynamic Time Warping, Proceeding of IEEE International Conference on Big Data Seattle, WA, USA, 10-13 Dec. 2018. 劉珊如 Mar. 5
Voronoi-Based K Nearest Neighbor Search for Spatial Network Databases, Proceedings of the 30th VLDB Conference, Toronto, Canada, 2004. 朱可欣 Mar. 5
Linear time algorithm for the longest common repeat problem, Journal of Discrete Algorithms 5 (2007) 243–249. 陳冠智 Mar. 13
Road Vehicle Detection Using Fuzzy Logic Rule-based Method ,Seventh International Conference on Fuzzy Systems and Knowledge Discovery, Yantai, Shandong, China. Aug. 10, 2010 – Aug. 12, 2010. 陳佳琳 Mar. 13
Polynomial-time approximation algorithms for weighted LCS problem, Discrete Applied Mathematics, Volume, May. 11, 2016, pp.38-48. 吳篤承 Mar. 13
A deep learning-based multi-model ensemble method for cancer prediction , Computer Methods and Programs in Biomedicine 153 (2018) 1–9. 蔡豐仰 Mar. 20
Computing Nonoverlapping Inversion Distance Between Two Strings in Linear Average Time, Journal of Computational Biology Vol. 26, No. 3, 2019 pp 193-201. 賴冠霖 Mar. 20
A New Technique for High-Accuracy Molecular Docking, Journal of Medicinal Chemistry,2006, Pages 3315 - 3321. 呂政彥 Apr. 2
BAYESIAN DEEP CONVOLUTIONAL NETWORKS WITH MANY CHANNELS ARE GAUSSIAN PROCESSES, Published as a conference paper at ICLR 2019, May 6-9, New Orleans. 朱可欣 Apr. 2
Dropout: A Simple Way to Prevent Neural Networks from Overfitting, Journal of Machine Learning Research 15(Jun):1929−1958, 2014. 陳佳琳 Apr. 2
Two-string consensus problem under non-overlapping inversion and transposition distance, Information Processing Letters 130 (2018) pp. 46-51. 賴冠霖 Apr. 9
A Novel Method of Characterizing Genetic Sequences: Genome Space with Biological Distance and Applications, PLoS One Volume 6, Issue 3, 2011. 蔡豐仰 Apr. 9
An Efficient Algorithm for a New Constrained LCS Problem, 8th Asian Conference, Intelligent Information and Database Systems,Da Nang, Vietnam, March 14–16, 2016, pp 261-267. 吳篤承 Apr. 9
A Meta Decision Tree Approach for B-cell Epitope Mining, IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB),2016, Pages 1 - 5, Chiang Mai, Thailand. 呂政彥 Apr. 16
Two-string consensus problem under non-overlapping inversion and transposition distance, Information Processing Letters 130 (2018) pp. 46-51. 賴冠霖 Apr. 16
Fast Exact Dynamic Time Warping on Run-Length Encoded Time Series, arXiv:1903.03003 March 9, 2019. 劉珊如 Apr. 23
Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning, Proceedings of the 31st AAAI Conference on Artificial Intelligence February 4–9,2017 at the Hilton San Francisco, San Francisco, California, USA. 陳佳琳 Apr. 23
DEEP NEURAL NETWORKS AS GAUSSIAN PROCESSES, Published version in ICLR 2018. 10, Vancouver CANADA .Seventh International Conference on Learning Representations . 朱可欣 Apr. 23
Palindromic rich words and run-length encodings, Information Processing Letters Volume 116, Pages 735-738, 2016. 梁庭瑋 Apr. 30
DNA sequence representation without degeneracy, Nucleic Acids Research, Vol. 31, No. 12, 2003. 蔡豐仰 Apr. 30
Using Deep Learning Neural Networks and Candlestick Chart Representation to Predict Stock Market, arXiv:1903.12258v1, Feb 26, 2019. 吳承翰 May. 7
Longest substring palindrome after edit, Annual Symposium on Combinatorial Pattern Matching (CPM 2018). 吳篤承 May. 7
Generative Adversarial Nets, Advances in Neural Information Processing Systems 27 (NIPS 2014), 2672-2680. Curran Associates, Inc. 朱可欣 May. 7
An OpenMP-based tool for finding longest common subsequence in bioinformatics, BMC Research Notes, 2019. 黃國峰 May. 13
Antibody-based molecular communication for targeted drug delivery systems, 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014, Pages 5707 - 5710, Chicago, IL, USA. 呂政彥 May. 13
Batch-Normalization-Accelerating-Deep-Network-Training-by-Reducing-Internal-Covariate-Shift, Submitted on 11 Feb 2015 (v1), last revised 2 Mar 2015 (this version, v3). 陳佳琳 May. 13
Position Specific Scoring Matrix and Synergistic Multiclass SVM for Identification of Genes, 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA), Orlando, USA. 蔡豐仰 May. 20
An Efficient Algorithm for LCS Problem between Two Arbitrary Sequences, Mathematical Problems in Engineering, 2018. 吳篤承 May. 20
Similarity Measure Based on Incremental Warping Window for Time Series Data Mining, IEEE Access Vol. 7, pp. 3909-3917, 2019. 劉珊如 May. 27
Fuzzy Control Systems: Past, Present and Future, IEEE Computational intelligence magazine | February 2019. 朱可欣 May. 27
A Survey of Monte Carlo Tree Search Methods, IEEE TRANSACTIONS ON COMPUTATIONAL INTELLIGENCE AND AI IN GAMES, VOL. 4, NO. 1, MARCH 2012. 陳佳琳 June. 12
Analysis of distance-based protein structure prediction by deep learning in CASP13, bioRxiv.org , 2019. 呂政彥 June. 18
On finding a longest common palindromic subsequence, IEEE Access ISPRS International Journal of Geo-Information, Volume 6, Issue 1 (January 2017). 吳篤承 June. 18
Learning representations by back-propagating errors, Nature volume 323, pages533–536 (1986). 陳佳琳 June. 26
FAST: A Novel Protein Structure Alignment Algorithm, PROTEINS: Structure, Function, and Bioinformatics 58:618–627 (2005). 蔡豐仰 June. 26
EERTREE: An Efficient Data Structure for Processing Palindromes in Strings, Proceedings of 26th International Workshop on Combinatorial Algorithms(IWOCA) Verona, Italy, 5-7 October 2015, pp. 321-333. 賴冠霖 Jul. 02
Is there a need for fuzzy logic?A nontraditional view of fuzzy logic, Information sciences 178(13): 2751-2779.2008. 朱可欣 Jul. 02
A Systematic Prediction of Drug-Target Interactions Using Molecular Fingerprints and Protein Sequences, Current Protein and Peptide Science, Volume 19, Number 5, 2018, pp. 468-478. 呂政彥 Jul. 09
Bit-Parallel Algorithms for the Merged Longest Common Subsequence Problem, International Journal of Foundations of Computer Science Vol. 24, No. 8 (2013) 1281–1298. 吳篤承 Jul. 09
Shortest Unique Palindromic Substring Queries on Run-Length Encoded Strings, Proceedings of International Workshop on Combinatorial Algorithms (IWOCA) Pisa, Italy, 23-25 July, pp. 430-441, 2019. 賴冠霖 Jul. 23
Protein Structure Alignment by Incremental Combinatorial Extension (CE) of the Optimal Path, Protein Engineering vol.11 no.9 pp.739–747, 1998. 蔡豐仰 Jul. 23
Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis, BioMed Central(BMC) Bioinformatics, Volume 20, July 25, 2019. 呂政彥 Jul. 30
Maximal common subsequence algorithm, Theoretical Computer Science, Available online 2 July 2019. In press, Corrected Proof. 吳篤承 Jul. 30
Constrained longest common subsequence computing algorithms in practice, Computing and Informatics, Vol. 29, 2010, 427–445. 朱可欣 Aug. 06
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding, NCCAL 2019, conference in June 3rd -June 6th. 陳佳琳 Aug. 06
A fast algorithm for the all-pairs suffix–prefix problem , Theoretical Computer Science 698 (2017) pp.14-24. 賴冠霖 Aug. 15
MatAlign: Precise Protein Structure Comparison by Matrix Alignment, Journal of Bioinformatics and Computational Biology Vol. 4, No. 6 (2006) 1197–1216. 蔡豐仰 Aug. 15
Q Real-time PM2.5 mapping and anomaly detection from AirBoxes in Taiwan. 陳佳琳 Aug. 20
Quadratic-time algorithm for a string constrained LCS problem, Information Processing Letters 112 (2012) 423–426. 吳篤承 Aug. 20
A non-negative matrix factorization based method for predicting disease-associated miRNAs in miRNA-disease bilayer network, Bioinformatics, Volume 34, Pages 267–277, 2017. 呂政彥 Aug. 27
Fast and Simple Algorithms for Computing both LCSk and LCSk+, Proceedings of the Prague Stringology Conference 50-62 August 27–28, 2018, Czech Technical University, Prague. 朱可欣 Sept. 03
Flexible and Efficient Algorithms for Abelian Matching in Genome Sequence, Bioinformatics, Volume 34, Proceedings of International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO), Granada, Spain, May 5-7, 2019, pp. 307-318. 賴冠霖 Sept. 10
Protein structure alignment beyond spatial proximity, Scientific Reports, 3 : 1448, (2013). 蔡豐仰 Sept. 10
Multiple protein sequence alignment, Current Opinion in Structural Biology Vol. 18, May 2008, pp. 382-386. 吳智愷 Sept. 10
FInduction of Decision Trees, Machine Learning 1: 81-106, 1986. 陳佳琳 Sept. 18
Maximal Common Subsequences and Minimal Common Supersequences, Information and Computation. Volume 124, Issue 2, February 1996, Pages 145-153. 吳篤承 Sept. 18
LGA: a method for finding 3D similarities in protein structures, Nucleic Acids Research, 2003, Vol. 31, No. 13. 宋恩安 Sept. 18
Optimal Suffix Tree Construction with Large Alphabets, Proceedings 38th Annual Symposium on Foundations of Computer Science, 1997, IEEE. Miami Beach, FL, USA. 朱可欣 Sept. 25
Prediction of microRNAs involved in immune system diseases through network based features, Journal of Biomedical Informatics, Volume 65, Pages 34–45, 2017. 呂政彥 Sept. 25
Indexed Dynamic Programming to Boost Edit Distance and LCSS Computation, Proceedings of International Symposium on String Processing and Information Retrieval Lima, Peru, 9-11 October 2018, pp. 61-73. 蔡元修 Sept. 25
Efficient pattern matching in degenerate strings with Burrows-Wheeler transform, Informtion Processing Letters 147(2019), pp. 82-87. 賴冠霖 Oct. 01
Gene Classification Using Codon Usage and Support Vector Machines, 1IEEE/ACM Transaction on Computational Biology and Bioinformatics, vol. 6, no. 1, January-March 2009. 李子旭 Oct. 01
Comparing protein structures and inferring functions with a novel three-dimensional Yau–Hausdorff method, Proceedings 38th Annual Symposium on Foundations of Computer Science, Journal of Bioinformatics and Computational Biology 2018 Dec; 37(16): 4151-4160. 蔡豐仰 Oct. 01
A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting, Journal of computer and system sciences Vol.55, pp.119-139 (1997). 陳佳琳 Oct. 08
Longest Common Subsequence in k Length Substrings, SISAP 2013, pp. 257–265. 李紹瑄 Oct. 08
Prediction of Drug-Disease Associations for Drug Repositioning Through Drug-miRNA-Disease Heterogeneous Network, IEEE Access, Volume 6, Pages 45281 - 45287, 2018. 呂政彥 Oct. 15
Polynomial-Delay Enumeration of Maximal Common Subsequences, String Processing and Information Retrieval, 26th International Symposium, SPIRE 2019, Segovia, Spain, October 7–9, 2019, pp. 189-202. 吳篤承 Oct. 15
PTime Series Analysis Based on Enhanced NLCS, The 3rd International Conference on Information Sciences and Interaction Sciences, 292 – 295, Guanzhou, China June, 2010. 宋恩安 Oct. 22
Minimum Common String Partition Revisited, International Workshop on Frontiers in Algorithmics Frontiers in Algorithmics FAW, Wuhan, China, 11-13 August 2010, pp. 45-52. 蔡元修 Oct. 22
Heuristic Algorithms for the Longest Filled Common Subsequence Problem, 2018 20th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC) at the West University of Timisoara, Romania. 吳智愷 Oct. 22
Occam's Razor, Information Processing Letters Volume 24, Issue 6, 6 April 1987, Pages 377-380. 朱可欣 Oct. 29
Frequent Pattern Mining with Non-overlapping Inversions, Proceedings of International Conference on Language and Automata Theory and Applications (LATA), Nice, France, March 2-6, 2015, pp. 121-132. 賴冠霖 Oct. 29
Minimum Common String Partition Revisited, International Workshop on Frontiers in Algorithmics FAW, Wuhan, China, 11-13 August 2010, pp. 45-52. 蔡元修 Oct. 29
         

 

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019