Presentation
file 
introducer 
date 
paper 
video 
H. Abdi, "A Neural Network Primer", Journal of Biological Systems, Vol. 2(3), pp. 247283, (1994) 
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Jan. 04 


Matthew E. P. Davies and Mark D. Plumbley, "Causal Tempo Tracking of Audio", 5th International Conference on Music Information Retrieval ISMIR 2004 
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Jan. 04 


Chris H.Q. Ding and Inna
Dubchak, "MultiClass Protein Fold Recognition Using Support Vector Machines and Neural Networks",
Bioinformatics, Vol. 17, No. 4, 2001, Pages 349¡V358 
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Jan. 04¡@



Wenbin Liu, Fengyue Zhang, and Jin
Xu, "A DNA Algorithm for the Graph Coloring Problem", J. Chem. Inf. Comput.
Sci. 2002, 42, 11761178 
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Jan. 11



Ilya N. Shindyalov and Philip E. Bourne, "A database and tools for 3D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm", Nucleic Acids Res. 2001 January 1; 29(1): 228¡V229 
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Jan. 11



Danny Barash, "Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation", BIOINFORMATICS, Vol. 20, no. 12, 2004,pp. 1861¡V1869 
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Jan. 18



Joseph C. Culberson and Piotr
Rudnicki, "A fast algorithm for constructing trees from distance matrices", Information Processing Letters 30 (1989) p.215¡Vp.220 
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Jan. 18



I.
Porche, M. Sampath, R. Sengupta, Y.L. Chen, and S. Lafortune, "A Decentralized Scheme for RealTime Optimization of Traffic Signals", Proceedings of the 1996 IEEE International Conference on Control Applications Dearborn, pp. 582589, 1996 
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Jan. 18



An Introduction to HMM and Its Applications 
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Jan. 26

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Alexandre Lacoste and Douglas Eck, "Onset Detection with Artificial Neural Networks for MIREX 2005", EURASIP Journal on Advances in Signal Processing, Vol. 2007, Article ID 43745, 13 pages 
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Jan. 26



Apostolico, Landau and Skiena, "Matching for RunLength Encoded Strings", Journal of Complexity, Vol. 15, pp. 4¡V16, 1999 
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Feb. 01



Pierre Tuffery, Frederic
Guyon, Philippe Derreumaux,
"Improved Greedy Algorithm for Protein Structure Reconstruction",
J Comput Chem 26: 506¡V513, 2005 
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Feb. 08



Alexandre Bernardino & Jos Á SantosVictor,
"Fast IIR Isotropic 2D Complex Gabor Filters with Boundary Initialization",
IEEE Transactions on Image Processing, Vol. 15, No. 11, pp. 3338¡V3348, Nov 2006

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Feb. 08



Andrew V. Goldberg,
"A Simple Shortest Path Algorithm with Linear Average Time",
ESA 2001, LNCS 2161, pp. 230¡V241, 2001

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Feb. 08



M. Beck, X. Wang, and T. Zaslavsky,
"A Unifying Generalization of Sperner¡¦s Theorem",
2001

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Feb. 13



HongBin Shen, KuoChen Chou,
"Ensemble Classifier for Protein Fold Pattern Recognition",
Bioinformatics, Vol.22, no.14, 2006, pages 1717¡V1722

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Mar. 07



Christopher Lee, Catherine Grasso and Mark F. Sharlow,
"Multiple sequence alignment using partial order graphs",
BIOINFORMATICS, Vol.18, no.3, 2002, pp.452¡V464

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Mar. 07



Valerio Freschi, Alessandro Bogliolo,
"Longest common subsequence between runlengthencoded strings: a new algorithm with improved parallelism",
Information Processing Letter 90 (2004) 167173

±i¹Å§» 
Mar. 07



Bart De Schutter,
"Optimal Traffic Light Control for a Single Intersection",
Proceedings of the 1999 American Control Conference, San Diego, California, pp. 21952199, June 1999.

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Mar. 21



J. Maupetit, R. Gautier and P. Tuffery,
"SABBAC: Online Structural AlphabetBased Protein Backbone Reconstruction from AlphaCarbon Trace",
Nucleic Acids Research, 2006, Vol. 34, Web Server issue W147¡VW151

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Mar. 21



KuoSi Huang, ChangBiau Yang, KuoTsung Tseng,YungHsing Peng, HsingYen Ann,
"Dynamic programming algorithms for the mosaic longest common subsequence problem",
Information Processing Letters, Vol. 102, pp. 99103, 2007

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Mar. 28



Esko Ukkonen,
"Online Construction of Suffix Trees",
Algorithmica, Vol. 14, No. 3, pp. 249260, 1995

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Mar. 28



Apostolico, Erdos and Lewenstein,
"Parameterized Matching with Mismatches",
Journal of Discrete Algorithms, Vol. 5, Issue 1, pp. 135140, 2007

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Apr. 19



Benjamin Raphael, Degui Zhi, Haixu Tang, and Pavel Pevzner,
"A novel method for multiple alignment of sequences with repeated and shuffled elements",
Genome Research, 2004, Vol.14, pp.23362346

±i¤p¿P 
Apr. 19



Joaqu Ân Bautista, Jordi Pereira,
"A GRASP Algorithm to Solve the Unicost Set Covering Problem",
Computers & Operations Research 34 (2007) 3162 ¡V 3173

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Apr. 19



Y. K. Lin,
"Reliability of a Flow Network Subject to Budget Constraints",
IEEE TRANSACTIONS ON RELIABILITY, Vol. 56, No. 1, pp. 1016, 2007

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May 02



C Áline R Ámia, Carl Fr Álicotb, Pierre Courtellemontb,
"Automatic analysis of the structure of children¡¦s drawing and writing",
Pattern recognition , Vol. 35, pp.1059¡V1069, 2002

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May 02



X.D. Sun and R.B. Huang,
"Prediction of protein structural classes using support vector machines",
Amino Acids, Vol. 30, pp. 469¡V475, 2006

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May 09



M. Jiang, Y.P. Luo, S.Y. Yang,
"Stochastic convergence analysis and parameter selection of the standard particle swarm optimization algorithm",
Information Processing Letters 102 (2007) 816

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May 09



Martin FarachColton, Paolo Ferragina and S. Muthukrishnan,
"On the SortingComplexity of Suffix Tree Construction",
Journal of the ACM, Vol. 47, No. 6, pp. 9871011, 2000

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May 09



Jeongah Yoon, Anselm Blumer1 and Kyongbum Lee,
"An algorithm for modularity analysis of directed and weighted biological networks based on edgebetweenness centrality",
BIOINFORMATICS Vol. 22 no. 24 2006, pages 3106¡V3108

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May 16



Jessica Ebert and Douglas Brutlag,
"Development and validation of a consistency based multiple structure alignment algorithm",
Bioinformatics, Vol.22, no.9, 2006, pp.1080¡V1087

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May 16



Kimmo Fredriksson and Maxim Mozgovoy,
"Efficient parameterized string matching",
Information Processing Letters, Vol. 100, pp. 9196, 2006

±i¹Å§» 
May 16



A. V. Aho and M. J. Corasick,
"Efficient String Matching: An Aid to Bibliographic Search",
Communications of the ACM, Vol. 18, No. 6, 1975, pp. 333340

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June 14



Karl Krissian, CarlFredrik Westin, Ron Kikinis, and Kirby G. Vosburgh,
"Oriented Speckle Reducing Anisotropic Diffusion",
IEEE TRANSACTIONS ON IMAGE PROCESSING, VOL. 16, NO. 5, MAY 2007

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June 14



I.C. Trelea,
"The particle swarm optimization algorithm: convergence analysis and parameter selection",
Information Processing Letters 85 (2003) 317325

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June 20



Zhong He Chen and R. C. T. Lee,
"The Application of Convolution to Suffix to Prefix Rule for the Exact String Matching Problem",
The 24th Workshop on Combinatorial Mathematics and Computation Theory, pp. 393 399

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June 20



Yann Hendel , Francis Sourd,
"An Improved Earlinesstardiness Timing Algorithm",
Computers & Operations Research 34 (2007) 2931 ¡V 2938

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June 27



Peter Clifford and Rapha Çl Clifford,
"Simple Deterministic Wildcard Matching",
Information Processing Letters, Vol. 101, pp. 5354, 2007

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June 27



Amit P. Singh and Douglas L. Brutlag,
"Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations",
Proc. Int. Conf. Intell. Syst. Mol. Biol. 5: 284¡V293, 1997

±i¤p¿P 
July 11



Wojciech Szpankowski, John Wiley & sons, INC.,
"Average Case Analysis of Algorithms on Sequences"
ISBN: 047124063X, 2001 Section 2.1~2.3

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July 11

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Areej Zuhily, Alan Burns,
"Optimal (DJ)monotonic priority assignment",
Information Processing Letters 103 (2007) 247¡V250

±i¹Å§» 
July 18



Thierry Lecroq,
"Fast exact string matching algorithms",
Information Processing Letters, Vol. 102, pp. 229¡V235, 2007

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July 18



JungHwan Chang,
"Ring Embedding in Faulty (n, k)star Graphs",
ICPADS, Proceedings of the Eighth International Conference on Parallel and Distributed Systems, Page: 99, Year of Publication: 2001

ªô³ì°¶ 
July 18



Xiaochun Cao and Hassan Foroosh,
"Camera Calibration Using Symmetric Objects",
IEEE TRANSACTIONS ON IMAGE PROCESSING, VOL. 15, NO. 11, MAY 2006

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July 27



A. D. McLachlan,
"Rapid Comparison of Protein Structures",
Acta Crystallographica Section A , pp.871873, 1982

±i¤p¿P 
Aug. 01



Wojciech Szpankowski, John Wiley & sons, INC.,
"Average Case Analysis of Algorithms on Sequences",
ISBN: 047124063X, 2001 Chapter 3, pp. 5156

¦w¿³«Û 
Aug. 08

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Amihood Amir, Gad M. Landau and Uzi Vishkin,
"Efficient Pattern Matching with Scaling",
Journal of Algorithms, Vol. 13, pp. 232, 1992

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Aug. 15



Pufeng Du, Tao He, Yanda Li,
"Prediction of CtoU RNA editing sites in higher plant mitochondria using only nucleotide sequence features",
Biochemical and Biophysical Research Communications 358 (2007) 336¡V341

±i¹Å§» 
Aug. 15



WeiKuo Chiang, RongJaye Chen,
"The (n, k)star graph: A generalized star graph",
Information Processing Letters 56 ( 1995) 259264

ªô³ì°¶ 
Aug. 22



DAVID ALDOUS AND PERSI DIACONIS,
"LONGEST INCREASING SUBSEQUENCES: FROM PATIENCE SORTING TO THE BAIKDEIFT JOHANSSON THEOREM",
BULLETIN (New Series) OF THE AMERICAN MATHEMATICAL SOCIETY Vol.36, Number 4, pp. 413  432

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Aug. 22



Wojciech Szpankowski, John Wiley & sons,
"Average Case Analysis of Algorithms on Sequences Section 2.4",
INC., ISBN: 047124063X, 2001

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Aug. 31

¡@


Shinichiro Omachi and Masako Omachi,
"Fast Template Matching With Polynomials",
IEEE TRANSACTIONS ON IMAGE PROCESSING, VOL. 16, NO. 08, MAY 2007

¦ó¬î½Ë 
Sept. 05



Michael Feig, Piotr Rotkiewicz, Andrzej Kolinski, Jeffrey Skolnick, and Charles L. Brooks III,
"Accurate Reconstruction of AllAtom Protein Representations From SideChainBased LowResolution Models",
PROTEINS: Structure, Function, and Genetics 41:86¡V97 (2000)

±i¤p¿P 
Sept. 05



Kimmo Fredriksson and Maxim Mozgovoy,
"Efficient parameterized string matching",
Information Processing Letters, Vol. 100, pp. 9196, 2006

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Sept. 19



TzungShi Chen, NenChung Wang,
"Optimal broadcasting on incomplete star graph interconnection networks",
Journal of Systems Architecture 51 (2005) 143¡V150

ªô³ì°¶ 
Sept. 19



Elena Rivas and Sean R. Eddy,
"A Dynamic Programming Algorithm for RNA Structure Prediction Including Pseudoknots",
J. Mol. Biol. (1999) 285, 20532068

±i¹Å§» 
Sept. 19



Ivan Y. Torshin, Irene T. Weber and Robert W. Harrison,
"Geometric criteria of hydrogen bonds in proteins and identification of `bifurcated' hydrogen bonds",
Protein Engineering, Vol. 15, No. 5, 359363, May 2002

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Sept. 26



JeanChristophe Novelli, Igor Pak and Alexander V. Stoyanovskii,
"A direct bijective proof of the hooklength formula",
Discrete Mathematics and Theoretical Computer Science,
Vol. 1, pp.5367, 1997

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Sept. 26



A. Amir, Y. Aumann, R. Cole, M. Lewenstein and E. Porat,
"Function Matching: Algorithms, Applications and a Lower Bound",
In Proceedings of the 30th International Colloquium on Automata, Languages and Programming (ICALP), pp. 929942, 2003

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Sept. 26



Philip W. Payne,
"Reconstruction of protein conformations from estimated positions of the C£\ coordinates",
Protein Science, pp.315324, 1993

±i¤p¿P 
Oct. 03



Michael A. Bender, Mart ân FarachColton and Miguel A. Mosteiro,
"Insertion Sort is O(nlogn)",
Theory of Computing Systems, Vol. 39, pp. 391397, 2006

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Oct. 03



Jonathan Richard Shewchuk,
"An Introduction to the Conjugate Gradient Method without the Agonizing Pain",
1994

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Oct. 17



TsengKuei Li,
"Cycle embedding in star graphs with edge faults",
Applied Mathematics and Computation 167 (2005) 891¡V900

ªô³ì°¶ 
Oct. 17



Rune B. Lyngso, Michael Zuker and Christian N. S. Pedersen,
"Fast evaluation of internal loops in RNA secondary structure prediction",
BIOINFORMATICS Vol. 15 no. 6 1999 Pages 440445

±i¹Å§» 
Oct. 17



"Moving averages",
Source: StockCharts.com >> Chart School
>> Technical Indicators and Overlays
>> Moving average

½²©v®e 
Oct. 24



WunTat Chan ¡P Yong Zhang ¡P Stanley P. Y. Fung ¡P Deshi Ye ¡P Hong Zhu
"Efficient algorithms for finding a longest common increasing subsequence",
Journal of Combinatorial Optimization, Vol. 13, pp. 277¡V288, 2007

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Oct. 24



KuoTsung Tseng,"Nearoptimal
Block Alignments" 
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Oct. 24



Ken A. Dill, Andrew T. Phillips, J. Ben Rosen,
"Protein Structure and Energy Landscape Dependence on Sequence using a Continuous Energy Function",
Journal of Computational Biology, 1997, pp.227239

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Oct. 31



Costas S. Iliopoulos and M. Sohel Rahman,
"New Efficient Algorithms for the LCS and Constrained LCS Problems",
Information Processing Letters (2007), doi: 10.1016/j.ipl.2007.09.008

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Oct. 31



A heuristic approach for detecting RNA Htype pseudoknots 
±i¹Å§» 
Nov. 07



Min Xu, XiaoDong Hu, Qiang Zhu,
"Edgebipancyclicity of star graphs under edgefault tolerant",
Applied Mathematics and Computation 183 (2006) 972¡V979

ªô³ì°¶ 
Nov. 14



Yuhui Shi and Russell C. Eberhart,
"Parameter Selection in Particle Swarm Optimization"

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Nov. 14



Sarmad Abbasi , Anirvan Sengupta,
"An O( n log n) algorithm for finding dissimilar strings",
Information Processing Letters 62 (1997) 135139

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Nov. 14



Irit Katriel and Martin Kutz
"A Faster Algorithm for Computing a Longest Common Increasing Subsequence",
Research Report MPIII20051007

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Nov. 21



A. Amir, Y. Aumann, R. Cole, M. Lewenstein and E. Porat
"Function Matching: Algorithms, Applications and a Lower Bound",
In Proceedings of the 30th International Colloquium on Automata, Languages and Programming (ICALP), pp. 929942, 2003

¦w¿³«Û 
Nov. 21



Benoit Roux,
"The Calculation of the Potential of Mean Force Using Computer Simulations",
Computer Physics Communications, vol. 91, pp. 275282, 1995

±i¤p¿P 
Nov. 30



Wei Shi, Pradip K. Srimani,
"Hierarchical star: a new two level interconnection network",
Journal of Systems Architecture 51 (2005) 1¡V14

ªô³ì°¶ 
Dec. 05



Christian BrauerBurchardt and Klaus Voss,
"A NEW ALGORITHM TO CORRECT FISHEYE AND STRONG WIDEANGLELENSDISTORTION FROM SINGLE IMAGES",
Proceedings of International Conference on Image Processing, 2001. pp. 225228, vol.1

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Dec. 05



Ajmal S. Mian, Mohammed Bennamoun, and Robyn Owens,
"An Efficient Multimodal 2D3D Hybrid Approach to Automatic Face Recognition",
IEEE TRANSACTIONS ON IMAGE PROCESSING,
Vol. 29, No. 11, Nov. 2007

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Dec. 12



Automatic RNA secondary structure prediction 
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Dec. 12



Edit
DistanceRLE 
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Dec. 19



Jian Pei, Jiawei Han, Jianyong Wang, Helen, Qiming Chen, Umeshwar Dayal and MeiChun Hsu ,
"Mining Sequenctial Patterns by PatternGrowth",
IEEE Transactions on knowledge and data engineering, Vol. 16, No. 11, November 2004

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Dec. 26



J. Arunachalam, V. Kanagasabai and N. Gautham,
"Protein Structure Prediction Using Mutually Orthogonal Latin Squares and a Genetic Algorithm",
Biochemical and Biophysical Research Communications,
Vol. 342, pp. 424~433, 2006

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Dec. 26


