Bioinformatics and Computation

1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018


Presentation file introducer date paper video
H. Abdi, "A Neural Network Primer", Journal of Biological Systems, Vol. 2(3), pp. 247-283, (1994) u Jan. 04
Matthew E. P. Davies and Mark D. Plumbley, "Causal Tempo Tracking of Audio", 5th International Conference on Music Information Retrieval ISMIR 2004 Z Jan. 04
Chris H.Q. Ding and Inna Dubchak, "Multi-Class Protein Fold Recognition Using Support Vector Machines and Neural Networks", Bioinformatics, Vol. 17, No. 4, 2001, Pages 349V358 LT

Jan. 04@

Wenbin Liu, Fengyue Zhang, and Jin Xu, "A DNA Algorithm for the Graph Coloring Problem", J. Chem. Inf. Comput. Sci. 2002, 42, 1176-1178 Jan. 11
Ilya N. Shindyalov and Philip E. Bourne, "A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm", Nucleic Acids Res. 2001 January 1; 29(1): 228V229 Jan. 11
Danny Barash, "Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation", BIOINFORMATICS, Vol. 20, no. 12, 2004,pp. 1861V1869 ipP Jan. 18
Joseph C. Culberson and Piotr Rudnicki, "A fast algorithm for constructing trees from distance matrices", Information Processing Letters 30 (1989) p.215Vp.220 v Jan. 18
I. Porche, M. Sampath, R. Sengupta, Y.-L. Chen, and S. Lafortune, "A Decentralized Scheme for Real-Time Optimization of Traffic Signals", Proceedings of the 1996 IEEE International Conference on Control Applications Dearborn, pp. 582-589, 1996 Ť Jan. 18
An Introduction to HMM and Its Applications ^ÿ Jan. 26 @
Alexandre Lacoste and Douglas Eck, "Onset Detection with Artificial Neural Networks for MIREX 2005", EURASIP Journal on Advances in Signal Processing, Vol. 2007, Article ID 43745, 13 pages Z Jan. 26
Apostolico, Landau and Skiena, "Matching for Run-Length Encoded Strings", Journal of Complexity, Vol. 15, pp. 4V16, 1999 w Feb. 01
Pierre Tuffery, Frederic Guyon, Philippe Derreumaux, "Improved Greedy Algorithm for Protein Structure Reconstruction", J Comput Chem 26: 506V513, 2005 u Feb. 08
Alexandre Bernardino & Jos Santos-Victor, "Fast IIR Isotropic 2-D Complex Gabor Filters with Boundary Initialization", IEEE Transactions on Image Processing, Vol. 15, No. 11, pp. 3338V3348, Nov 2006 Feb. 08
Andrew V. Goldberg, "A Simple Shortest Path Algorithm with Linear Average Time", ESA 2001, LNCS 2161, pp. 230V241, 2001 Feb. 08
M. Beck, X. Wang, and T. Zaslavsky, "A Unifying Generalization of Sperners Theorem", 2001 yx Feb. 13
Hong-Bin Shen, Kuo-Chen Chou, "Ensemble Classifier for Protein Fold Pattern Recognition", Bioinformatics, Vol.22, no.14, 2006, pages 1717V1722 LT Mar. 07
Christopher Lee, Catherine Grasso and Mark F. Sharlow, "Multiple sequence alignment using partial order graphs", BIOINFORMATICS, Vol.18, no.3, 2002, pp.452V464 ipP Mar. 07
Valerio Freschi, Alessandro Bogliolo, "Longest common subsequence between run-length-encoded strings: a new algorithm with improved parallelism", Information Processing Letter 90 (2004) 167-173 Mar. 07
Bart De Schutter, "Optimal Traffic Light Control for a Single Intersection", Proceedings of the 1999 American Control Conference, San Diego, California, pp. 2195-2199, June 1999. Ť Mar. 21
J. Maupetit, R. Gautier and P. Tuffery, "SABBAC: Online Structural Alphabet-Based Protein Backbone Reconstruction from Alpha-Carbon Trace", Nucleic Acids Research, 2006, Vol. 34, Web Server issue W147VW151 u Mar. 21
Kuo-Si Huang, Chang-Biau Yang, Kuo-Tsung Tseng,Yung-Hsing Peng, Hsing-Yen Ann, "Dynamic programming algorithms for the mosaic longest common subsequence problem", Information Processing Letters, Vol. 102, pp. 99-103, 2007 v Mar. 28
Esko Ukkonen, "On-line Construction of Suffix Trees", Algorithmica, Vol. 14, No. 3, pp. 249-260, 1995 ^ÿ Mar. 28
Apostolico, Erdos and Lewenstein, "Parameterized Matching with Mismatches", Journal of Discrete Algorithms, Vol. 5, Issue 1, pp. 135-140, 2007 w Apr. 19
Benjamin Raphael, Degui Zhi, Haixu Tang, and Pavel Pevzner, "A novel method for multiple alignment of sequences with repeated and shuffled elements", Genome Research, 2004, Vol.14, pp.2336-2346 ipP Apr. 19
Joaqun Bautista, Jordi Pereira, "A GRASP Algorithm to Solve the Unicost Set Covering Problem", Computers & Operations Research 34 (2007) 3162 V 3173 Apr. 19
Y. K. Lin, "Reliability of a Flow Network Subject to Budget Constraints", IEEE TRANSACTIONS ON RELIABILITY, Vol. 56, No. 1, pp. 10-16, 2007 yx May 02
Cline Rmia, Carl Frlicotb, Pierre Courtellemontb, "Automatic analysis of the structure of childrens drawing and writing", Pattern recognition , Vol. 35, pp.1059V1069, 2002 May 02
X.-D. Sun and R.-B. Huang, "Prediction of protein structural classes using support vector machines", Amino Acids, Vol. 30, pp. 469V475, 2006 v May 09
M. Jiang, Y.P. Luo, S.Y. Yang, "Stochastic convergence analysis and parameter selection of the standard particle swarm optimization algorithm", Information Processing Letters 102 (2007) 8-16 ve May 09
Martin Farach-Colton, Paolo Ferragina and S. Muthukrishnan, "On the Sorting-Complexity of Suffix Tree Construction", Journal of the ACM, Vol. 47, No. 6, pp. 987-1011, 2000 ^ÿ May 09
Jeongah Yoon, Anselm Blumer1 and Kyongbum Lee, "An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality", BIOINFORMATICS Vol. 22 no. 24 2006, pages 3106V3108 May 16
Jessica Ebert and Douglas Brutlag, "Development and validation of a consistency based multiple structure alignment algorithm", Bioinformatics, Vol.22, no.9, 2006, pp.1080V1087 ipP May 16
Kimmo Fredriksson and Maxim Mozgovoy, "Efficient parameterized string matching", Information Processing Letters, Vol. 100, pp. 91-96, 2006 May 16
A. V. Aho and M. J. Corasick, "Efficient String Matching: An Aid to Bibliographic Search", Communications of the ACM, Vol. 18, No. 6, 1975, pp. 333-340 w June 14
Karl Krissian, Carl-Fredrik Westin, Ron Kikinis, and Kirby G. Vosburgh, "Oriented Speckle Reducing Anisotropic Diffusion", IEEE TRANSACTIONS ON IMAGE PROCESSING, VOL. 16, NO. 5, MAY 2007 June 14
I.C. Trelea, "The particle swarm optimization algorithm: convergence analysis and parameter selection", Information Processing Letters 85 (2003) 317-325 ve June 20
Zhong He Chen and R. C. T. Lee, "The Application of Convolution to Suffix to Prefix Rule for the Exact String Matching Problem", The 24th Workshop on Combinatorial Mathematics and Computation Theory, pp. 393- 399 v June 20
Yann Hendel , Francis Sourd, "An Improved Earliness-tardiness Timing Algorithm", Computers & Operations Research 34 (2007) 2931 V 2938 June 27
Peter Clifford and Raphal Clifford, "Simple Deterministic Wildcard Matching", Information Processing Letters, Vol. 101, pp. 53-54, 2007 ^ÿ June 27
Amit P. Singh and Douglas L. Brutlag, "Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations", Proc. Int. Conf. Intell. Syst. Mol. Biol. 5: 284V293, 1997 ipP July 11
Wojciech Szpankowski, John Wiley & sons, INC., "Average Case Analysis of Algorithms on Sequences" ISBN: 0-471-24063-X, 2001 Section 2.1~2.3 yx July 11 @
Areej Zuhily, Alan Burns, "Optimal (D-J)-monotonic priority assignment", Information Processing Letters 103 (2007) 247V250 July 18
Thierry Lecroq, "Fast exact string matching algorithms", Information Processing Letters, Vol. 102, pp. 229V235, 2007 v July 18
Jung-Hwan Chang, "Ring Embedding in Faulty (n, k)-star Graphs", ICPADS, Proceedings of the Eighth International Conference on Parallel and Distributed Systems, Page: 99, Year of Publication: 2001 July 18
Xiaochun Cao and Hassan Foroosh, "Camera Calibration Using Symmetric Objects", IEEE TRANSACTIONS ON IMAGE PROCESSING, VOL. 15, NO. 11, MAY 2006 July 27
A. D. McLachlan, "Rapid Comparison of Protein Structures", Acta Crystallographica Section A , pp.871-873, 1982 ipP Aug. 01
Wojciech Szpankowski, John Wiley & sons, INC., "Average Case Analysis of Algorithms on Sequences", ISBN: 0-471-24063-X, 2001 Chapter 3, pp. 51-56 w Aug. 08 @
Amihood Amir, Gad M. Landau and Uzi Vishkin, "Efficient Pattern Matching with Scaling", Journal of Algorithms, Vol. 13, pp. 2-32, 1992 ^ÿ Aug. 15
Pufeng Du, Tao He, Yanda Li, "Prediction of C-to-U RNA editing sites in higher plant mitochondria using only nucleotide sequence features", Biochemical and Biophysical Research Communications 358 (2007) 336V341 Aug. 15
Wei-Kuo Chiang, Rong-Jaye Chen, "The (n, k)-star graph: A generalized star graph", Information Processing Letters 56 ( 1995) 259-264 Aug. 22
Wojciech Szpankowski, John Wiley & sons, "Average Case Analysis of Algorithms on Sequences Section 2.4", INC., ISBN: 0-471-24063-X, 2001 yx Aug. 31 @
Shinichiro Omachi and Masako Omachi, "Fast Template Matching With Polynomials", IEEE TRANSACTIONS ON IMAGE PROCESSING, VOL. 16, NO. 08, MAY 2007 Sept. 05
Michael Feig, Piotr Rotkiewicz, Andrzej Kolinski, Jeffrey Skolnick, and Charles L. Brooks III, "Accurate Reconstruction of All-Atom Protein Representations From Side-Chain-Based Low-Resolution Models", PROTEINS: Structure, Function, and Genetics 41:86V97 (2000) ipP Sept. 05
Kimmo Fredriksson and Maxim Mozgovoy, "Efficient parameterized string matching", Information Processing Letters, Vol. 100, pp. 91-96, 2006 T Sept. 19
Tzung-Shi Chen, Nen-Chung Wang, "Optimal broadcasting on incomplete star graph interconnection networks", Journal of Systems Architecture 51 (2005) 143V150 Sept. 19
Elena Rivas and Sean R. Eddy, "A Dynamic Programming Algorithm for RNA Structure Prediction Including Pseudoknots", J. Mol. Biol. (1999) 285, 2053-2068 Sept. 19
Ivan Y. Torshin, Irene T. Weber and Robert W. Harrison, "Geometric criteria of hydrogen bonds in proteins and identification of `bifurcated' hydrogen bonds", Protein Engineering, Vol. 15, No. 5, 359-363, May 2002 ve Sept. 26
Jean-Christophe Novelli, Igor Pak and Alexander V. Stoyanovskii, "A direct bijective proof of the hook-length formula", Discrete Mathematics and Theoretical Computer Science, Vol. 1, pp.53-67, 1997 v Sept. 26
A. Amir, Y. Aumann, R. Cole, M. Lewenstein and E. Porat, "Function Matching: Algorithms, Applications and a Lower Bound", In Proceedings of the 30th International Colloquium on Automata, Languages and Programming (ICALP), pp. 929-942, 2003 w Sept. 26
Philip W. Payne, "Reconstruction of protein conformations from estimated positions of the C\ coordinates", Protein Science, pp.315-324, 1993 ipP Oct. 03
Michael A. Bender, Martn Farach-Colton and Miguel A. Mosteiro, "Insertion Sort is O(nlogn)", Theory of Computing Systems, Vol. 39, pp. 391-397, 2006 ^ÿ Oct. 03
Jonathan Richard Shewchuk, "An Introduction to the Conjugate Gradient Method without the Agonizing Pain", 1994 yx Oct. 17
Tseng-Kuei Li, "Cycle embedding in star graphs with edge faults", Applied Mathematics and Computation 167 (2005) 891V900 Oct. 17
Rune B. Lyngso, Michael Zuker and Christian N. S. Pedersen, "Fast evaluation of internal loops in RNA secondary structure prediction", BIOINFORMATICS Vol. 15 no. 6 1999 Pages 440-445 Oct. 17
"Moving averages", Source: >> Chart School >> Technical Indicators and Overlays >> Moving average ve Oct. 24
Wun-Tat Chan P Yong Zhang P Stanley P. Y. Fung P Deshi Ye P Hong Zhu "Efficient algorithms for finding a longest common increasing subsequence", Journal of Combinatorial Optimization, Vol. 13, pp. 277V288, 2007 v Oct. 24
Kuo-Tsung Tseng,"Near-optimal Block Alignments" L Oct. 24
Ken A. Dill, Andrew T. Phillips, J. Ben Rosen, "Protein Structure and Energy Landscape Dependence on Sequence using a Continuous Energy Function", Journal of Computational Biology, 1997, pp.227-239 ipP Oct. 31
Costas S. Iliopoulos and M. Sohel Rahman, "New Efficient Algorithms for the LCS and Constrained LCS Problems", Information Processing Letters (2007), doi: 10.1016/j.ipl.2007.09.008 T Oct. 31
A heuristic approach for detecting RNA H-type pseudoknots Nov. 07
Min Xu, Xiao-Dong Hu, Qiang Zhu, "Edge-bipancyclicity of star graphs under edge-fault tolerant", Applied Mathematics and Computation 183 (2006) 972V979 Nov. 14
Yuhui Shi and Russell C. Eberhart, "Parameter Selection in Particle Swarm Optimization" ve Nov. 14
Sarmad Abbasi , Anirvan Sengupta, "An O( n log n) algorithm for finding dissimilar strings", Information Processing Letters 62 (1997) 135-139 βq Nov. 14
Irit Katriel and Martin Kutz "A Faster Algorithm for Computing a Longest Common Increasing Subsequence", Research Report MPI-I-I2005-1-007 v Nov. 21
A. Amir, Y. Aumann, R. Cole, M. Lewenstein and E. Porat "Function Matching: Algorithms, Applications and a Lower Bound", In Proceedings of the 30th International Colloquium on Automata, Languages and Programming (ICALP), pp. 929-942, 2003 w Nov. 21
Benoit Roux, "The Calculation of the Potential of Mean Force Using Computer Simulations", Computer Physics Communications, vol. 91, pp. 275-282, 1995 ipP Nov. 30
Wei Shi, Pradip K. Srimani, "Hierarchical star: a new two level interconnection network", Journal of Systems Architecture 51 (2005) 1V14 Dec. 05
Christian Brauer-Burchardt and Klaus Voss, "A NEW ALGORITHM TO CORRECT FISH-EYE- AND STRONG WIDE-ANGLELENS-DISTORTION FROM SINGLE IMAGES", Proceedings of International Conference on Image Processing, 2001. pp. 225-228, vol.1 v Dec. 05
Ajmal S. Mian, Mohammed Bennamoun, and Robyn Owens, "An Efficient Multi-modal 2D-3D Hybrid Approach to Automatic Face Recognition", IEEE TRANSACTIONS ON IMAGE PROCESSING, Vol. 29, No. 11, Nov. 2007 Dec. 12
Automatic RNA secondary structure prediction Dec. 12
Edit DistanceRLE yx Dec. 19
Jian Pei, Jiawei Han, Jianyong Wang, Helen, Qiming Chen, Umeshwar Dayal and MeiChun Hsu , "Mining Sequenctial Patterns by Pattern-Growth", IEEE Transactions on knowledge and data engineering, Vol. 16, No. 11, November 2004 ve Dec. 26
J. Arunachalam, V. Kanagasabai and N. Gautham, "Protein Structure Prediction Using Mutually Orthogonal Latin Squares and a Genetic Algorithm", Biochemical and Biophysical Research Communications, Vol. 342, pp. 424~433, 2006 ipP Dec. 26


1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018